Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 BEX4-202ENST00000372695 1328 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 AAAS-217ENST00000550286 1652 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 GFOD2-201ENST00000268797 2126 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC20.6■□□□□ 0.89
COL5A3P25940 TMEM225B-203ENST00000453227 1041 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 USB1-203ENST00000539737 1212 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 AC138028.3-201ENST00000561699 213 ntTSL 3 BASIC20.6■□□□□ 0.89
COL5A3P25940 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC20.6■□□□□ 0.89
COL5A3P25940 AC133550.2-201ENST00000567731 544 ntTSL 4 BASIC20.6■□□□□ 0.89
COL5A3P25940 AC036164.1-201ENST00000570544 333 ntBASIC20.6■□□□□ 0.89
COL5A3P25940 AC008758.5-201ENST00000595562 617 ntAPPRIS P1 TSL 4 BASIC20.6■□□□□ 0.89
COL5A3P25940 SNX12-206ENST00000622259 661 ntTSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
COL5A3P25940 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 HAS3-205ENST00000569188 2170 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 NDRG2-204ENST00000360463 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 GGT3P-204ENST00000453783 1664 ntBASIC20.6■□□□□ 0.89
COL5A3P25940 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 GNAZ-203ENST00000615612 3333 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 LINC01185-202ENST00000452343 1705 ntTSL 2 BASIC20.6■□□□□ 0.89
COL5A3P25940 KCNC2-203ENST00000393288 2485 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
COL5A3P25940 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL5A3P25940 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC20.59■□□□□ 0.89
COL5A3P25940 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 BCAS3-204ENST00000585744 2203 ntAPPRIS ALT2 TSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 ADAMTSL1-208ENST00000380570 931 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
COL5A3P25940 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 PRSS42-202ENST00000447340 1280 ntTSL 2 BASIC20.59■□□□□ 0.89
COL5A3P25940 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC20.59■□□□□ 0.89
COL5A3P25940 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC20.59■□□□□ 0.89
COL5A3P25940 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC20.59■□□□□ 0.89
COL5A3P25940 AC135178.3-201ENST00000583963 531 ntTSL 4 BASIC20.59■□□□□ 0.89
COL5A3P25940 KXD1-204ENST00000595073 1095 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 AL033527.5-201ENST00000641382 801 ntBASIC20.59■□□□□ 0.89
COL5A3P25940 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 EIF2B3-210ENST00000620860 1923 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 CNOT11-201ENST00000289382 2599 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
COL5A3P25940 KCNJ2-AS1-201ENST00000590966 2442 ntBASIC20.59■□□□□ 0.89
COL5A3P25940 GRN-214ENST00000589265 1632 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 KLHL33-201ENST00000344581 1863 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 NAP1L5-201ENST00000323061 2321 ntAPPRIS P1 BASIC20.59■□□□□ 0.89
COL5A3P25940 PRR5-218ENST00000624862 1900 ntTSL 5 BASIC20.59■□□□□ 0.89
COL5A3P25940 GBGT1-202ENST00000372038 847 ntTSL 3 BASIC20.58■□□□□ 0.89
COL5A3P25940 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC20.58■□□□□ 0.89
COL5A3P25940 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 RPP40-207ENST00000618533 1056 ntTSL 5 BASIC20.58■□□□□ 0.89
COL5A3P25940 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC20.58■□□□□ 0.89
COL5A3P25940 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
COL5A3P25940 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 RNF165-204ENST00000587853 2011 ntTSL 5 BASIC20.58■□□□□ 0.89
COL5A3P25940 PTPA-204ENST00000355007 2515 ntTSL 5 BASIC20.58■□□□□ 0.89
COL5A3P25940 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC20.58■□□□□ 0.89
COL5A3P25940 ALDH4A1-201ENST00000290597 2124 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 GCH1-207ENST00000622544 2923 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 FAM222A-202ENST00000538780 3294 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
COL5A3P25940 OXCT1-AS1-201ENST00000508458 1731 ntTSL 3 BASIC20.58■□□□□ 0.89
COL5A3P25940 EHD2-202ENST00000538399 1766 ntTSL 2 BASIC20.58■□□□□ 0.88
COL5A3P25940 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC20.58■□□□□ 0.88
COL5A3P25940 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC20.58■□□□□ 0.88
COL5A3P25940 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.58■□□□□ 0.88
COL5A3P25940 PRM2-201ENST00000241808 680 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A3P25940 AC099336.1-201ENST00000417053 1171 ntBASIC20.58■□□□□ 0.88
COL5A3P25940 PRM2-202ENST00000435245 723 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.88
COL5A3P25940 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
COL5A3P25940 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A3P25940 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
COL5A3P25940 AC009065.5-201ENST00000565937 596 ntTSL 3 BASIC20.58■□□□□ 0.88
COL5A3P25940 GNRHR2-203ENST00000581100 1187 ntBASIC20.58■□□□□ 0.88
COL5A3P25940 C19orf70-204ENST00000587950 655 ntTSL 2 BASIC20.58■□□□□ 0.88
COL5A3P25940 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC20.58■□□□□ 0.88
COL5A3P25940 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A3P25940 EIF3K-203ENST00000545173 1327 ntAPPRIS ALT1 TSL 2 BASIC20.58■□□□□ 0.88
COL5A3P25940 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A3P25940 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
COL5A3P25940 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC20.57■□□□□ 0.88
COL5A3P25940 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms