Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 AC092580.3-201ENST00000430932 139 ntBASIC16.14■□□□□ 0.17
HOXC4P09017 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 AC061975.2-201ENST00000581722 295 ntBASIC16.14■□□□□ 0.17
HOXC4P09017 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.14■□□□□ 0.17
HOXC4P09017 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 AC073592.8-201ENST00000624126 511 ntBASIC16.14■□□□□ 0.17
HOXC4P09017 PLEKHG5-206ENST00000377748 5221 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 FBXO4-201ENST00000281623 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 HLA-A-202ENST00000376806 1854 ntBASIC16.14■□□□□ 0.17
HOXC4P09017 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HOXC4P09017 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 HEPN1-201ENST00000408930 1434 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HOXC4P09017 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 ARL6IP6-201ENST00000326446 2805 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 CLPP-201ENST00000245816 1155 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HOXC4P09017 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HOXC4P09017 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HOXC4P09017 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC4P09017 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.13■□□□□ 0.17
HOXC4P09017 POU5F1P6-201ENST00000466990 990 ntBASIC16.13■□□□□ 0.17
HOXC4P09017 INGX-202ENST00000489074 768 ntBASIC16.13■□□□□ 0.17
HOXC4P09017 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.13■□□□□ 0.17
HOXC4P09017 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC16.13■□□□□ 0.17
HOXC4P09017 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC4P09017 AC105021.1-202ENST00000570572 669 ntBASIC16.13■□□□□ 0.17
HOXC4P09017 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 AC004771.3-201ENST00000574260 551 ntTSL 4 BASIC16.13■□□□□ 0.17
HOXC4P09017 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC16.13■□□□□ 0.17
HOXC4P09017 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 HEXIM2-206ENST00000591576 1176 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 RN7SL828P-201ENST00000607615 303 ntBASIC16.13■□□□□ 0.17
HOXC4P09017 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 ZDHHC2-201ENST00000262096 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
HOXC4P09017 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HOXC4P09017 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC16.13■□□□□ 0.17
HOXC4P09017 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC16.13■□□□□ 0.17
HOXC4P09017 OSGEP-201ENST00000206542 2002 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 ANKRD23-202ENST00000331001 2455 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 ADCY8-201ENST00000286355 5938 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 HSD17B7P2-202ENST00000494540 1401 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 SYTL3-202ENST00000360448 2504 ntAPPRIS ALT1 TSL 5 BASIC16.12■□□□□ 0.17
HOXC4P09017 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 RALY-203ENST00000375114 6430 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 PDLIM1-201ENST00000329399 1452 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 MRS2-202ENST00000378353 1740 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC16.12■□□□□ 0.17
HOXC4P09017 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 CABP5-201ENST00000293255 1257 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 EIF5A-201ENST00000336452 1256 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 CENPM-205ENST00000404067 905 ntTSL 3 BASIC16.12■□□□□ 0.17
HOXC4P09017 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 AC241585.1-201ENST00000433527 519 ntBASIC16.12■□□□□ 0.17
HOXC4P09017 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.12■□□□□ 0.17
HOXC4P09017 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC16.12■□□□□ 0.17
HOXC4P09017 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HOXC4P09017 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.12■□□□□ 0.17
HOXC4P09017 SPATS2L-218ENST00000451764 2250 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
HOXC4P09017 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC16.12■□□□□ 0.17
HOXC4P09017 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 ARHGAP9-204ENST00000430041 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
HOXC4P09017 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC16.12■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 36.8 ms