Protein–RNA interactions for Protein: O95197

RTN3, Reticulon-3, humanhuman

Predicted RBP Predictions only

Length 1,032 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3O95197 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC17.57■□□□□ 0.4
RTN3O95197 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 WASH6P-202ENST00000359512 1437 ntBASIC17.57■□□□□ 0.4
RTN3O95197 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 MRGPRD-201ENST00000309106 966 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RTN3O95197 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC17.57■□□□□ 0.4
RTN3O95197 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.57■□□□□ 0.4
RTN3O95197 WDR53-204ENST00000433160 887 ntTSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 SPINK2-203ENST00000506738 763 ntAPPRIS ALT2 TSL 2 BASIC17.57■□□□□ 0.4
RTN3O95197 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC17.57■□□□□ 0.4
RTN3O95197 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC17.57■□□□□ 0.4
RTN3O95197 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC17.57■□□□□ 0.4
RTN3O95197 AL135744.1-201ENST00000565098 629 ntBASIC17.57■□□□□ 0.4
RTN3O95197 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC17.57■□□□□ 0.4
RTN3O95197 IRF1-211ENST00000613424 821 ntTSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.57■□□□□ 0.4
RTN3O95197 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC17.57■□□□□ 0.4
RTN3O95197 USB1-201ENST00000219281 2282 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 WASF1-205ENST00000392587 2675 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 TMEM86B-201ENST00000327042 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC17.57■□□□□ 0.4
RTN3O95197 AC022211.2-201ENST00000585075 2527 ntBASIC17.57■□□□□ 0.4
RTN3O95197 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC17.57■□□□□ 0.4
RTN3O95197 RPS5-202ENST00000596046 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.57■□□□□ 0.4
RTN3O95197 VAC14-201ENST00000261776 3099 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 THAP8-201ENST00000292894 1825 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 AL136379.1-201ENST00000623471 2642 ntBASIC17.56■□□□□ 0.4
RTN3O95197 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 FOXRED2-203ENST00000397223 2184 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 IQCE-210ENST00000438376 2170 ntAPPRIS ALT2 TSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 PSMA8-202ENST00000343848 1675 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 BLZF1-202ENST00000367807 1295 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC17.56■□□□□ 0.4
RTN3O95197 TCEAL3-203ENST00000372628 1221 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 LBH-203ENST00000404397 543 ntTSL 4 BASIC17.56■□□□□ 0.4
RTN3O95197 GGCT-205ENST00000409436 954 ntTSL 3 BASIC17.56■□□□□ 0.4
RTN3O95197 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 AC007364.1-201ENST00000449714 1022 ntTSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 KRT8P48-201ENST00000515599 1220 ntBASIC17.56■□□□□ 0.4
RTN3O95197 AC119403.1-201ENST00000520090 776 ntTSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 SMCO4-204ENST00000527149 472 ntAPPRIS P1 TSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 RAB9A-203ENST00000618931 737 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC17.56■□□□□ 0.4
RTN3O95197 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 CDIP1-207ENST00000564828 1636 ntTSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 RASGRP2-206ENST00000377494 2983 ntAPPRIS ALT1 TSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 SLC6A17-201ENST00000331565 6427 ntAPPRIS P1 TSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 ARHGAP35-201ENST00000404338 8889 ntAPPRIS P1 TSL 1 (best) BASIC17.56■□□□□ 0.4
RTN3O95197 MIER1-204ENST00000371012 2420 ntTSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC17.56■□□□□ 0.4
RTN3O95197 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC17.56■□□□□ 0.4
RTN3O95197 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 MYC-202ENST00000377970 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 CHRNA5-201ENST00000299565 3623 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC17.55■□□□□ 0.4
RTN3O95197 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC17.55■□□□□ 0.4
RTN3O95197 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC17.55■□□□□ 0.4
RTN3O95197 CPEB2-204ENST00000382401 5509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC17.55■□□□□ 0.4
RTN3O95197 KRT18P28-201ENST00000453838 1332 ntBASIC17.55■□□□□ 0.4
RTN3O95197 AL731569.1-201ENST00000428940 3058 ntTSL 2 BASIC17.55■□□□□ 0.4
RTN3O95197 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 ITLN1-201ENST00000326245 1183 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC17.55■□□□□ 0.4
RTN3O95197 PMS2P2-201ENST00000425039 1128 ntBASIC17.55■□□□□ 0.4
RTN3O95197 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC17.55■□□□□ 0.4
RTN3O95197 OTUB2-202ENST00000553723 708 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.55■□□□□ 0.4
RTN3O95197 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC17.55■□□□□ 0.4
RTN3O95197 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.55■□□□□ 0.4
RTN3O95197 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
RTN3O95197 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms