Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 PEX13-204ENST00000444100 1533 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
VPS4BO75351 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS4BO75351 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 ME2P1-201ENST00000426028 1970 ntBASIC16.39■□□□□ 0.21
VPS4BO75351 MON2-201ENST00000393629 5612 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 MRPL52-202ENST00000355151 1118 ntAPPRIS ALT1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 MRPL52-203ENST00000397496 1111 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 LBH-204ENST00000406087 559 ntTSL 4 BASIC16.39■□□□□ 0.21
VPS4BO75351 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS4BO75351 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS4BO75351 AC026336.2-201ENST00000563922 763 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC16.39■□□□□ 0.21
VPS4BO75351 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 AC114488.2-214ENST00000609033 813 ntTSL 5 BASIC16.39■□□□□ 0.21
VPS4BO75351 Z83851.2-201ENST00000609564 659 ntBASIC16.39■□□□□ 0.21
VPS4BO75351 AC134684.3-201ENST00000641758 218 ntBASIC16.39■□□□□ 0.21
VPS4BO75351 CLCF1-201ENST00000312438 1844 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC16.39■□□□□ 0.21
VPS4BO75351 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 C2orf81-206ENST00000640868 2407 ntAPPRIS ALT2 BASIC16.39■□□□□ 0.21
VPS4BO75351 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 LINC02138-201ENST00000378340 1326 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 GPER1-204ENST00000401670 1542 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 STPG3-AS1-201ENST00000612170 1701 ntTSL 2 BASIC16.39■□□□□ 0.21
VPS4BO75351 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
VPS4BO75351 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 ZNF57-201ENST00000306908 2003 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 ZNF57-205ENST00000614108 2002 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 NFATC4-203ENST00000422617 5491 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 KRT8P49-201ENST00000604166 1432 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 VKORC1-201ENST00000300851 876 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.38■□□□□ 0.21
VPS4BO75351 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 SPDYE21P-201ENST00000413323 827 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 RPS2P1-201ENST00000434010 821 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 FIS1-203ENST00000442303 631 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS4BO75351 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
VPS4BO75351 HS6ST1P1-201ENST00000481504 1234 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC16.38■□□□□ 0.21
VPS4BO75351 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 OR7E14P-202ENST00000530490 1290 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 AC034105.1-201ENST00000563488 319 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS4BO75351 C19orf25-210ENST00000591027 574 ntTSL 4 BASIC16.38■□□□□ 0.21
VPS4BO75351 AP000867.4-201ENST00000641616 219 ntBASIC16.38■□□□□ 0.21
VPS4BO75351 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 TRIB3-202ENST00000422053 1533 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 ELAVL2-208ENST00000544538 3789 ntAPPRIS P3 TSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 HSF5-201ENST00000323777 4094 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 KDM4B-203ENST00000536461 5027 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
VPS4BO75351 FAM237A-203ENST00000543490 1376 ntAPPRIS P1 TSL 5 BASIC16.38■□□□□ 0.21
VPS4BO75351 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC16.38■□□□□ 0.21
VPS4BO75351 FAM210B-201ENST00000371384 3046 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 CTDP1-201ENST00000075430 3538 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC16.37■□□□□ 0.21
VPS4BO75351 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 ITSN1-209ENST00000399352 5408 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 AC097637.2-201ENST00000624096 1997 ntBASIC16.37■□□□□ 0.21
VPS4BO75351 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
VPS4BO75351 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 CHAT-203ENST00000351556 2286 ntAPPRIS ALT2 TSL 5 BASIC16.37■□□□□ 0.21
VPS4BO75351 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC16.37■□□□□ 0.21
VPS4BO75351 GFAP-233ENST00000639277 1783 ntTSL 5 BASIC16.37■□□□□ 0.21
VPS4BO75351 COL2A1-202ENST00000380518 5071 ntAPPRIS ALT1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 48.7 ms