Protein–RNA interactions for Protein: O43196

MSH5, MutS protein homolog 5, humanhuman

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5O43196 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC23.1■■□□□ 1.29
MSH5O43196 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 NAP1L4-222ENST00000620138 2479 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 CYP4F8-210ENST00000612078 1889 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 OR8V1P-201ENST00000395193 873 ntBASIC23.09■■□□□ 1.29
MSH5O43196 TPT1P4-201ENST00000403538 519 ntBASIC23.09■■□□□ 1.29
MSH5O43196 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
MSH5O43196 APCDD1L-AS1-201ENST00000420279 555 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH5O43196 AC069540.1-201ENST00000446320 988 ntBASIC23.09■■□□□ 1.29
MSH5O43196 MRFAP1-203ENST00000507420 563 ntAPPRIS P1 TSL 4 BASIC23.09■■□□□ 1.29
MSH5O43196 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 RFPL4AP1-201ENST00000530883 850 ntBASIC23.09■■□□□ 1.29
MSH5O43196 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 ZNF720-211ENST00000539915 837 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH5O43196 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH5O43196 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 AL359238.1-201ENST00000557770 744 ntTSL 3 BASIC23.09■■□□□ 1.29
MSH5O43196 AC023389.1-201ENST00000577846 576 ntTSL 4 BASIC23.09■■□□□ 1.29
MSH5O43196 ZNF772-206ENST00000600175 737 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 AC012593.1-211ENST00000625996 799 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 WASF1-207ENST00000392589 3220 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 ABR-203ENST00000536794 2213 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 ZNF140-207ENST00000440550 1663 ntTSL 2 BASIC23.09■■□□□ 1.29
MSH5O43196 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC23.09■■□□□ 1.29
MSH5O43196 DNAAF2-202ENST00000406043 2819 ntAPPRIS ALT2 TSL 1 (best) BASIC23.09■■□□□ 1.29
MSH5O43196 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 ITGB2-AS1-202ENST00000441379 2282 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 CD2AP-201ENST00000359314 5412 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 APCDD1-201ENST00000355285 3809 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 PGR-209ENST00000617858 2816 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 SCUBE2-207ENST00000520467 3148 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
MSH5O43196 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 C9orf135-201ENST00000377197 873 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 DLEU1-201ENST00000378180 981 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 LINC01665-201ENST00000422917 1241 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 HTR5BP-201ENST00000430851 1154 ntBASIC23.08■■□□□ 1.29
MSH5O43196 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 AC112250.1-201ENST00000504640 745 ntBASIC23.08■■□□□ 1.29
MSH5O43196 AC025183.1-201ENST00000506335 425 ntTSL 4 BASIC23.08■■□□□ 1.29
MSH5O43196 AC018442.2-201ENST00000523658 648 ntTSL 3 BASIC23.08■■□□□ 1.29
MSH5O43196 CFL1-202ENST00000524553 860 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH5O43196 AP003730.2-202ENST00000527281 774 ntTSL 3 BASIC23.08■■□□□ 1.29
MSH5O43196 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC23.08■■□□□ 1.29
MSH5O43196 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC23.08■■□□□ 1.29
MSH5O43196 ICAM2-205ENST00000578379 1064 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 ICAM2-206ENST00000578892 1056 ntTSL 3 BASIC23.08■■□□□ 1.29
MSH5O43196 NKAPP1-205ENST00000585790 367 ntBASIC23.08■■□□□ 1.29
MSH5O43196 AC013444.2-201ENST00000603317 787 ntBASIC23.08■■□□□ 1.29
MSH5O43196 CU638689.5-201ENST00000623892 1032 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 KCNJ10-204ENST00000637644 1239 ntTSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 KCNK7-204ENST00000394217 1372 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 TMEM175-222ENST00000622959 1967 ntTSL 1 (best) BASIC23.08■■□□□ 1.29
MSH5O43196 MYH14-208ENST00000598205 6137 ntAPPRIS P3 TSL 5 BASIC23.08■■□□□ 1.29
MSH5O43196 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC23.08■■□□□ 1.28
MSH5O43196 MAP2K7-202ENST00000397981 3430 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
MSH5O43196 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
MSH5O43196 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC23.08■■□□□ 1.28
MSH5O43196 CLDN7-203ENST00000538261 1923 ntTSL 5 BASIC23.08■■□□□ 1.28
MSH5O43196 FADS2-209ENST00000521849 1703 ntTSL 1 (best) BASIC23.08■■□□□ 1.28
MSH5O43196 CPXCR1-201ENST00000276127 1630 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.28
MSH5O43196 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC23.08■■□□□ 1.28
MSH5O43196 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC23.08■■□□□ 1.28
MSH5O43196 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC23.08■■□□□ 1.28
MSH5O43196 TFRC-202ENST00000392396 5032 ntAPPRIS P3 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 DHRS7B-206ENST00000579303 1479 ntAPPRIS ALT1 TSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 IL4I1-204ENST00000595948 2407 ntAPPRIS P4 TSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC23.07■■□□□ 1.28
MSH5O43196 CACNA1A-227ENST00000636549 6792 ntAPPRIS ALT2 TSL 5 BASIC23.07■■□□□ 1.28
MSH5O43196 LMBR1L-204ENST00000547382 2235 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
MSH5O43196 BRCC3-202ENST00000340647 1101 ntAPPRIS P2 TSL 2 BASIC23.07■■□□□ 1.28
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms