Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC16.27■□□□□ 0.2
HDAC3O15379 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 GUK1-204ENST00000366721 689 ntTSL 3 BASIC16.27■□□□□ 0.2
HDAC3O15379 RNF216P1-205ENST00000406089 807 ntTSL 5 BASIC16.27■□□□□ 0.2
HDAC3O15379 TP53TG1-202ENST00000416560 710 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 POM121L3P-201ENST00000419331 1163 ntBASIC16.27■□□□□ 0.2
HDAC3O15379 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC16.27■□□□□ 0.2
HDAC3O15379 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 TPSP2-201ENST00000561760 610 ntBASIC16.27■□□□□ 0.2
HDAC3O15379 GZMM-202ENST00000592501 941 ntTSL 3 BASIC16.27■□□□□ 0.2
HDAC3O15379 GNAS-AS1-203ENST00000598163 548 ntTSL 4 BASIC16.27■□□□□ 0.2
HDAC3O15379 MED16-213ENST00000616387 1078 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
HDAC3O15379 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC16.27■□□□□ 0.2
HDAC3O15379 AL121956.5-201ENST00000625261 221 ntBASIC16.27■□□□□ 0.2
HDAC3O15379 KIFC3-206ENST00000541240 3047 ntTSL 2 BASIC16.27■□□□□ 0.2
HDAC3O15379 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC16.27■□□□□ 0.19
HDAC3O15379 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.27■□□□□ 0.19
HDAC3O15379 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.27■□□□□ 0.19
HDAC3O15379 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC16.27■□□□□ 0.19
HDAC3O15379 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC16.27■□□□□ 0.19
HDAC3O15379 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC16.27■□□□□ 0.19
HDAC3O15379 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
HDAC3O15379 GHDC-201ENST00000301671 2650 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
HDAC3O15379 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
HDAC3O15379 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC16.27■□□□□ 0.19
HDAC3O15379 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC16.26■□□□□ 0.19
HDAC3O15379 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 LRRFIP2-205ENST00000421276 2522 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 ANKRD26P3-201ENST00000454044 2748 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 DNM1-208ENST00000486160 3181 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 TSC2-202ENST00000350773 5532 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 SHANK1-204ENST00000391814 6622 ntAPPRIS ALT2 TSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 CAB39-203ENST00000410084 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 RNF182-206ENST00000537388 3274 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 PAPLN-202ENST00000340738 5834 ntAPPRIS P2 TSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 MTHFD1L-203ENST00000367321 3604 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 NT5E-202ENST00000369646 974 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 AC211429.1-201ENST00000415277 523 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 TSSC2-201ENST00000450217 709 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 POU5F1P6-201ENST00000466990 990 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 TOB2P1-201ENST00000469761 992 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.26■□□□□ 0.19
HDAC3O15379 CIB2-208ENST00000560618 804 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 MIR4492-201ENST00000581627 80 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 AC002091.2-201ENST00000585297 402 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 LINC01023-201ENST00000606054 436 ntBASIC16.26■□□□□ 0.19
HDAC3O15379 CREBBP-201ENST00000262367 10803 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 CFAP45-201ENST00000368099 1842 ntAPPRIS P2 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 ASNS-201ENST00000175506 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC16.26■□□□□ 0.19
HDAC3O15379 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
HDAC3O15379 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC16.26■□□□□ 0.19
HDAC3O15379 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 AP005117.1-202ENST00000581724 1908 ntBASIC16.25■□□□□ 0.19
HDAC3O15379 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 ISPD-201ENST00000399310 1709 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 PROSER1-211ENST00000625998 5102 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 AC005332.1-201ENST00000577698 1310 ntBASIC16.25■□□□□ 0.19
HDAC3O15379 TLDC2-201ENST00000217320 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 AP4B1-204ENST00000369569 2818 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC16.25■□□□□ 0.19
HDAC3O15379 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 PC-214ENST00000628663 1470 ntTSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
HDAC3O15379 ZNF496-201ENST00000294753 5336 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
HDAC3O15379 THAP5-204ENST00000438865 868 ntTSL 2 BASIC16.25■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms