Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC13.48□□□□□ -0.25
HMGB3O15347 PLA2G4F-202ENST00000397272 5587 ntAPPRIS P1 TSL 1 (best) BASIC13.48□□□□□ -0.25
HMGB3O15347 SLC27A5-201ENST00000263093 2361 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 SLCO4A1-AS1-202ENST00000433126 1420 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 MAPKAPK3-203ENST00000446044 2988 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 FES-204ENST00000414248 2327 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC13.47□□□□□ -0.25
HMGB3O15347 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 TRIM13-204ENST00000420995 2607 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 CASC3-201ENST00000264645 4116 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 EWSR1-201ENST00000331029 2267 ntTSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 ATG9A-205ENST00000409618 4025 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 VLDLR-AS1-205ENST00000599229 1346 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 SNX31-201ENST00000311812 2457 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 EGLN3-201ENST00000250457 2709 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 TCEAL3-201ENST00000243286 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 TSPY12P-201ENST00000421279 868 ntBASIC13.47□□□□□ -0.25
HMGB3O15347 AL390955.1-201ENST00000428694 934 ntBASIC13.47□□□□□ -0.25
HMGB3O15347 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC13.47□□□□□ -0.25
HMGB3O15347 CCNJL-205ENST00000519673 940 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC13.47□□□□□ -0.25
HMGB3O15347 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 METTL23-208ENST00000588822 1049 ntTSL 3 BASIC13.47□□□□□ -0.25
HMGB3O15347 AC024563.2-201ENST00000603282 481 ntBASIC13.47□□□□□ -0.25
HMGB3O15347 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 C6orf48-210ENST00000614363 748 ntAPPRIS P1 TSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 AC113410.3-201ENST00000623366 203 ntBASIC13.47□□□□□ -0.25
HMGB3O15347 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 FGD1-201ENST00000375135 4275 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 MAGEA3-201ENST00000370278 1724 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 SFI1-209ENST00000443011 3579 ntTSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 KCP-206ENST00000613019 4853 ntAPPRIS P5 TSL 5 BASIC13.47□□□□□ -0.25
HMGB3O15347 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC13.47□□□□□ -0.25
HMGB3O15347 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 IGSF8-205ENST00000614243 2191 ntAPPRIS P2 TSL 1 (best) BASIC13.47□□□□□ -0.25
HMGB3O15347 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CRTC1-202ENST00000338797 6929 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CAD-202ENST00000403525 6900 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CAB39-202ENST00000409788 1626 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 NSD2-206ENST00000382895 7827 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CSNK1A1-202ENST00000377843 2559 ntAPPRIS ALT1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC13.46□□□□□ -0.25
HMGB3O15347 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 ZNF536-201ENST00000355537 4945 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 CAPRIN1-207ENST00000529307 2266 ntAPPRIS ALT2 TSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 BDKRB2-202ENST00000542454 6845 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 GALNT4-201ENST00000529983 5399 ntAPPRIS P1 BASIC13.46□□□□□ -0.25
HMGB3O15347 NR2C1-201ENST00000330677 2014 ntTSL 5 BASIC13.46□□□□□ -0.25
HMGB3O15347 CDH1-201ENST00000261769 4889 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CLCN2-202ENST00000344937 3187 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 OTOG-202ENST00000399391 8778 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
HMGB3O15347 MAP3K4-204ENST00000392142 5490 ntAPPRIS P4 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC13.46□□□□□ -0.25
HMGB3O15347 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 Telomerase-vert.1-201ENST00000363312 438 ntBASIC13.46□□□□□ -0.25
HMGB3O15347 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC13.46□□□□□ -0.25
HMGB3O15347 GXYLT1P6-201ENST00000456472 1187 ntBASIC13.46□□□□□ -0.25
HMGB3O15347 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC13.46□□□□□ -0.25
HMGB3O15347 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 AP005717.1-202ENST00000523563 419 ntTSL 3 BASIC13.46□□□□□ -0.25
HMGB3O15347 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC13.46□□□□□ -0.25
HMGB3O15347 CBLN3-202ENST00000555436 718 ntTSL 3 BASIC13.46□□□□□ -0.25
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms