Protein–RNA interactions for Protein: O00570

SOX1, Transcription factor SOX-1, humanhuman

Predicted RBP Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX1O00570 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SOX1O00570 BMP8B-201ENST00000372827 4822 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX1O00570 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC17.51■□□□□ 0.39
SOX1O00570 NFATC4-220ENST00000555393 2235 ntTSL 1 (best) BASIC17.51■□□□□ 0.39
SOX1O00570 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX1O00570 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC17.51■□□□□ 0.39
SOX1O00570 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC17.51■□□□□ 0.39
SOX1O00570 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 ARFIP1-202ENST00000356064 1302 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 ACSL6-201ENST00000296869 2561 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX1O00570 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 SIL1-213ENST00000509534 1714 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX1O00570 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX1O00570 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 ANKRD24-201ENST00000262970 3711 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SOX1O00570 RPS3-201ENST00000278572 907 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX1O00570 VSIG2-201ENST00000326621 1148 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 TAGLN-202ENST00000392951 928 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX1O00570 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX1O00570 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX1O00570 AL139420.1-201ENST00000439394 653 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX1O00570 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC17.5■□□□□ 0.39
SOX1O00570 AL591846.1-201ENST00000451736 433 ntBASIC17.5■□□□□ 0.39
SOX1O00570 AC091804.1-201ENST00000486888 567 ntBASIC17.5■□□□□ 0.39
SOX1O00570 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 FTLP10-202ENST00000505798 471 ntBASIC17.5■□□□□ 0.39
SOX1O00570 AC090502.1-202ENST00000515416 966 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX1O00570 AL359711.2-201ENST00000563105 872 ntBASIC17.5■□□□□ 0.39
SOX1O00570 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.5■□□□□ 0.39
SOX1O00570 KLK15-203ENST00000596931 692 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 KLK3-211ENST00000597483 810 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX1O00570 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 CADPS-201ENST00000283269 4591 ntAPPRIS P4 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
SOX1O00570 AC020763.4-201ENST00000623414 4170 ntBASIC17.5■□□□□ 0.39
SOX1O00570 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC17.5■□□□□ 0.39
SOX1O00570 LY9-204ENST00000368039 1364 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 IQGAP2-201ENST00000274364 5844 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 POR-209ENST00000439269 1858 ntTSL 2 BASIC17.5■□□□□ 0.39
SOX1O00570 CYP2A7-201ENST00000291764 2128 ntTSL 5 BASIC17.5■□□□□ 0.39
SOX1O00570 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC17.5■□□□□ 0.39
SOX1O00570 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 TBC1D4-204ENST00000431480 6347 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
SOX1O00570 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 BCL2L12-202ENST00000246785 1431 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SOX1O00570 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC17.49■□□□□ 0.39
SOX1O00570 PGRMC1-202ENST00000535419 1762 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 KCTD20-210ENST00000536244 5345 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 ZNF711-201ENST00000276123 2887 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 MRPS22-212ENST00000495075 1547 ntAPPRIS P2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 PPIE-203ENST00000372830 1198 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 AC243836.1-201ENST00000416696 438 ntTSL 3 BASIC17.49■□□□□ 0.39
SOX1O00570 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.49■□□□□ 0.39
SOX1O00570 AC016694.1-201ENST00000434179 700 ntBASIC17.49■□□□□ 0.39
SOX1O00570 TMEM176A-202ENST00000461345 635 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
SOX1O00570 AC008267.1-201ENST00000474858 1069 ntBASIC17.49■□□□□ 0.39
SOX1O00570 MANEAL-204ENST00000525897 1294 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC17.49■□□□□ 0.39
SOX1O00570 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 LINC00116-203ENST00000611969 441 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 SIRT2-219ENST00000613542 1170 ntTSL 5 BASIC17.49■□□□□ 0.39
SOX1O00570 AC005695.3-201ENST00000614522 232 ntBASIC17.49■□□□□ 0.39
SOX1O00570 TM7SF3-201ENST00000343028 2709 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 KRT79-201ENST00000330553 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.49■□□□□ 0.39
SOX1O00570 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.49■□□□□ 0.39
SOX1O00570 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
SOX1O00570 MYC-207ENST00000621592 2366 ntAPPRIS ALT1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 AC005332.7-201ENST00000614046 2005 ntBASIC17.48■□□□□ 0.39
SOX1O00570 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC17.48■□□□□ 0.39
SOX1O00570 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX1O00570 LRRC27-214ENST00000625755 1738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 ATIC-205ENST00000435675 2275 ntTSL 2 BASIC17.48■□□□□ 0.39
SOX1O00570 RHCE-202ENST00000340849 1087 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 AK1-202ENST00000373156 757 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SOX1O00570 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 HLA-DQB2-229ENST00000411527 1059 ntBASIC17.48■□□□□ 0.39
SOX1O00570 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC17.48■□□□□ 0.39
SOX1O00570 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
SOX1O00570 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
SOX1O00570 UCHL1-207ENST00000508768 827 ntTSL 3 BASIC17.48■□□□□ 0.39
SOX1O00570 KRT90P-201ENST00000549264 1064 ntBASIC17.48■□□□□ 0.39
SOX1O00570 MIR22HG-212ENST00000577164 931 ntTSL 4 BASIC17.48■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms