Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 AL031587.1-201ENST00000410099 1055 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SPDYE21P-201ENST00000413323 827 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 AL671277.2-201ENST00000458060 996 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 CMC2-212ENST00000565650 671 ntAPPRIS P1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 ABBA01031661.1-201ENST00000634362 1253 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 AC133561.5-201ENST00000635547 218 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 AP000867.4-201ENST00000641616 219 ntBASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SCAMP2-201ENST00000268099 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 LIMK2-203ENST00000340552 2789 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 SP100-205ENST00000409824 1802 ntTSL 5 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
CCDC28BQ9BUN5 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 L2HGDH-202ENST00000267436 6414 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 GSAP-201ENST00000257626 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 TLE3-215ENST00000559048 2918 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 CYP4X1-201ENST00000371901 2357 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 AGTPBP1-201ENST00000337006 4473 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 NFIC-211ENST00000641145 8399 ntBASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 ASB1-201ENST00000264607 6994 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 CARHSP1-201ENST00000311052 746 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 ZFAND2A-201ENST00000316495 860 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 ZFAND2A-203ENST00000401903 968 ntTSL 3 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 DET1-205ENST00000558413 583 ntTSL 4 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 AP005901.3-202ENST00000581653 237 ntBASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 NDUFV2-AS1-203ENST00000608008 779 ntBASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 CLDN15-208ENST00000611078 1509 ntTSL 5 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 PEG3-206ENST00000598410 5304 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 RBFOX1-212ENST00000550418 4775 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
CCDC28BQ9BUN5 GLG1-201ENST00000205061 8261 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 NR2E3-202ENST00000617575 1998 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 AC139530.2-201ENST00000571730 1922 ntAPPRIS P1 TSL 2 BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 SIGLEC16-201ENST00000599858 1437 ntBASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.19
CCDC28BQ9BUN5 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 DUS3L-202ENST00000320699 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 FBXO28-201ENST00000366862 5451 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 SNX5-202ENST00000377768 2288 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 UBAP1-201ENST00000297661 2735 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 KIF18B-204ENST00000593135 2745 ntAPPRIS P3 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 FERMT3-201ENST00000279227 2489 ntAPPRIS P4 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 FERMT3-202ENST00000345728 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 RAB37-208ENST00000402449 1560 ntAPPRIS P3 TSL 2 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 HMOX2-204ENST00000414777 1752 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 GFAP-203ENST00000435360 1779 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 SLC30A1-201ENST00000367001 5474 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 TSNARE1-205ENST00000520166 1742 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 PLD3-201ENST00000356508 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 MRPL43-205ENST00000370234 798 ntTSL 1 (best) BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 S100A2-206ENST00000497140 697 ntTSL 2 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 AC063952.2-201ENST00000498792 1227 ntBASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 AC010531.1-201ENST00000568879 953 ntAPPRIS P1 TSL 4 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 AL590235.2-202ENST00000602543 594 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 HNF1B-206ENST00000620125 1103 ntTSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC16.26■□□□□ 0.19
CCDC28BQ9BUN5 MDFIC-202ENST00000393486 4393 ntAPPRIS P1 TSL 1 (best) BASIC16.26■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms