Protein–RNA interactions for Protein: Q9BQW3

EBF4, Transcription factor COE4, humanhuman

Predictions only

Length 602 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EBF4Q9BQW3 SPDYE21P-201ENST00000413323 827 ntBASIC16.29■□□□□ 0.2
EBF4Q9BQW3 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 PCAT7-201ENST00000452148 1164 ntTSL 2 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 AL671277.2-201ENST00000458060 996 ntBASIC16.29■□□□□ 0.2
EBF4Q9BQW3 KRT8P26-201ENST00000534154 1276 ntBASIC16.29■□□□□ 0.2
EBF4Q9BQW3 ABR-204ENST00000543210 1049 ntTSL 2 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 ABR-217ENST00000572441 563 ntTSL 4 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 TMEM220-AS1-202ENST00000580899 561 ntTSL 4 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 AC008105.3-202ENST00000585471 1077 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 AC010632.1-201ENST00000590376 572 ntTSL 4 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 AC097493.4-201ENST00000641197 219 ntBASIC16.29■□□□□ 0.2
EBF4Q9BQW3 LINC02228-204ENST00000642115 2962 ntBASIC16.29■□□□□ 0.2
EBF4Q9BQW3 PITPNM1-201ENST00000356404 4225 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 CDC42BPG-201ENST00000342711 5742 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 WLS-202ENST00000354777 2037 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 GRAMD2B-201ENST00000285689 3175 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 TNRC18P2-201ENST00000417666 2714 ntBASIC16.29■□□□□ 0.2
EBF4Q9BQW3 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 H2BFM-201ENST00000355016 1882 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
EBF4Q9BQW3 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 SMN1-204ENST00000506163 1445 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 CFC1B-203ENST00000620207 1444 ntTSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 CFC1-203ENST00000621673 1444 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 LINC02447-202ENST00000501888 2146 ntBASIC16.28■□□□□ 0.2
EBF4Q9BQW3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AC022532.1-201ENST00000624563 1728 ntBASIC16.28■□□□□ 0.2
EBF4Q9BQW3 PIGF-201ENST00000281382 1372 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 UROC1-202ENST00000383579 2735 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 MARCH4-201ENST00000273067 4447 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 PLVAP-201ENST00000252590 2305 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 SYT5-207ENST00000590851 3619 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AC010931.2-202ENST00000514871 2566 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 QRFP-201ENST00000343079 411 ntAPPRIS P1 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 HCCS-202ENST00000380762 1072 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 NUTF2-205ENST00000568396 1179 ntAPPRIS P1 TSL 3 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AC004771.4-201ENST00000576752 474 ntTSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 TERC-201ENST00000602385 541 ntBASIC16.28■□□□□ 0.2
EBF4Q9BQW3 mascRNA-menRNA.2-201ENST00000616984 58 ntBASIC16.28■□□□□ 0.2
EBF4Q9BQW3 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AP000867.4-201ENST00000641616 219 ntBASIC16.28■□□□□ 0.2
EBF4Q9BQW3 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 SALL3-202ENST00000537592 6555 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 TBC1D25-201ENST00000376771 4042 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 KIFC3-205ENST00000540079 2781 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 EPS8L2-223ENST00000533256 3266 ntAPPRIS P2 TSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 HARS-203ENST00000431330 1774 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 PDLIM2-206ENST00000409141 1463 ntTSL 2 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 ANKMY1-207ENST00000403283 2874 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 AC005906.2-217ENST00000639573 1711 ntTSL 5 BASIC16.28■□□□□ 0.2
EBF4Q9BQW3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 ACE-203ENST00000413513 2237 ntTSL 2 BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 DMTN-202ENST00000358242 2772 ntTSL 5 BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 RPRD1A-209ENST00000590898 1945 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 ZMYND11-208ENST00000397962 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 ALKBH5-203ENST00000541285 1605 ntTSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 AC010642.2-201ENST00000634676 2413 ntTSL 5 BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 PPT1-215ENST00000641471 2368 ntBASIC16.27■□□□□ 0.2
EBF4Q9BQW3 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
EBF4Q9BQW3 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms