Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 EEF1E1-205ENST00000507463 654 ntTSL 2 BASIC19.09■□□□□ 0.65
USP28Q96RU2 AC073648.2-201ENST00000510116 352 ntBASIC19.09■□□□□ 0.65
USP28Q96RU2 IGHV3-65-201ENST00000523210 341 ntBASIC19.09■□□□□ 0.65
USP28Q96RU2 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC19.09■□□□□ 0.65
USP28Q96RU2 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 GGTLC5P-201ENST00000617623 998 ntBASIC19.09■□□□□ 0.65
USP28Q96RU2 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
USP28Q96RU2 H1F0-201ENST00000340857 2344 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
USP28Q96RU2 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 ELF2-204ENST00000394235 4012 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 AP002414.3-201ENST00000589352 1468 ntBASIC19.09■□□□□ 0.65
USP28Q96RU2 AL445931.1-201ENST00000412181 2112 ntTSL 2 BASIC19.09■□□□□ 0.65
USP28Q96RU2 GIT2-220ENST00000553118 2424 ntTSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC19.09■□□□□ 0.65
USP28Q96RU2 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC19.08■□□□□ 0.65
USP28Q96RU2 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC19.08■□□□□ 0.65
USP28Q96RU2 AC024909.3-201ENST00000611513 2257 ntBASIC19.08■□□□□ 0.65
USP28Q96RU2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP28Q96RU2 RDH10-201ENST00000240285 3949 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP28Q96RU2 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
USP28Q96RU2 PCGF3-213ENST00000620529 1899 ntBASIC19.08■□□□□ 0.65
USP28Q96RU2 MRPS18A-201ENST00000372116 785 ntTSL 2 BASIC19.08■□□□□ 0.64
USP28Q96RU2 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.08■□□□□ 0.64
USP28Q96RU2 CENPM-204ENST00000402420 688 ntTSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC19.08■□□□□ 0.64
USP28Q96RU2 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.08■□□□□ 0.64
USP28Q96RU2 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.08■□□□□ 0.64
USP28Q96RU2 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC19.08■□□□□ 0.64
USP28Q96RU2 OR7E47P-204ENST00000575924 449 ntBASIC19.08■□□□□ 0.64
USP28Q96RU2 CYB561-216ENST00000582297 897 ntTSL 3 BASIC19.08■□□□□ 0.64
USP28Q96RU2 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 AC008735.5-201ENST00000623544 497 ntBASIC19.08■□□□□ 0.64
USP28Q96RU2 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 SDR16C5-201ENST00000303749 1840 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 ERO1A-201ENST00000395686 5285 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 PGR-209ENST00000617858 2816 ntTSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.64
USP28Q96RU2 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 ZNF671-201ENST00000317398 2431 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
USP28Q96RU2 ACSS1-201ENST00000323482 3680 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 DYRK3-201ENST00000367106 2329 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 FOXP3-202ENST00000376199 2274 ntTSL 2 BASIC19.07■□□□□ 0.64
USP28Q96RU2 ASAH1-223ENST00000636171 2283 ntTSL 5 BASIC19.07■□□□□ 0.64
USP28Q96RU2 COL26A1-203ENST00000613501 2970 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 TMEM44-201ENST00000330115 1278 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 IFT27-201ENST00000340630 1113 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 AC109309.1-201ENST00000418995 435 ntTSL 3 BASIC19.07■□□□□ 0.64
USP28Q96RU2 TCTN1-208ENST00000471804 718 ntTSL 3 BASIC19.07■□□□□ 0.64
USP28Q96RU2 AC087641.1-201ENST00000557561 1021 ntBASIC19.07■□□□□ 0.64
USP28Q96RU2 AC005412.3-201ENST00000580309 715 ntBASIC19.07■□□□□ 0.64
USP28Q96RU2 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 LINC01666-201ENST00000623794 845 ntTSL 5 BASIC19.07■□□□□ 0.64
USP28Q96RU2 AC148477.8-201ENST00000624298 468 ntBASIC19.07■□□□□ 0.64
USP28Q96RU2 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 CDC14A-202ENST00000361544 2417 ntAPPRIS P4 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
USP28Q96RU2 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC19.07■□□□□ 0.64
USP28Q96RU2 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.07■□□□□ 0.64
USP28Q96RU2 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.07■□□□□ 0.64
USP28Q96RU2 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC19.07■□□□□ 0.64
USP28Q96RU2 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC19.07■□□□□ 0.64
USP28Q96RU2 AC006449.6-201ENST00000612330 2296 ntBASIC19.07■□□□□ 0.64
USP28Q96RU2 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
USP28Q96RU2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 ARHGAP6-202ENST00000337414 5117 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
USP28Q96RU2 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 AC129492.6-201ENST00000611383 1305 ntBASIC19.06■□□□□ 0.64
USP28Q96RU2 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC19.06■□□□□ 0.64
USP28Q96RU2 SLC22A12-201ENST00000336464 1854 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
USP28Q96RU2 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.06■□□□□ 0.64
USP28Q96RU2 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
USP28Q96RU2 FAM197Y8-203ENST00000450145 560 ntBASIC19.06■□□□□ 0.64
USP28Q96RU2 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
USP28Q96RU2 AL356488.2-201ENST00000602755 427 ntBASIC19.06■□□□□ 0.64
USP28Q96RU2 ZEB1-AS1-209ENST00000607455 559 ntTSL 4 BASIC19.06■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms