Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 AC004461.2-201ENST00000629517 803 ntBASIC16.24■□□□□ 0.19
VPS13AQ96RL7 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 PIMREG-201ENST00000250056 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 MCM9-201ENST00000316068 2442 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 KCNJ2-202ENST00000535240 1685 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 TLK2-202ENST00000343388 3227 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 LAMA4-203ENST00000368638 1061 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 KRT43P-201ENST00000434019 910 ntBASIC16.24■□□□□ 0.19
VPS13AQ96RL7 BX324167.1-201ENST00000451118 805 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 REEP1-202ENST00000453231 940 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 ATP6V0E2-202ENST00000425642 1649 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 EGFL6-202ENST00000380602 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 LINC00315-201ENST00000441947 2323 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 PPM1M-202ENST00000323588 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 PDXDC1-204ENST00000455313 2183 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 CYTH4-203ENST00000405206 636 ntTSL 4 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 ZSCAN32-204ENST00000422427 1267 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 AC016723.1-201ENST00000430546 633 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 DGUOK-AS1-202ENST00000439192 563 ntTSL 2 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 LINC01595-201ENST00000555406 639 ntTSL 3 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 ARL13B-203ENST00000394222 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 MAPKAPK3-208ENST00000621469 2563 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
VPS13AQ96RL7 TTLL10-201ENST00000379288 2114 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 TP73-213ENST00000604479 1623 ntTSL 5 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 ZNF839-202ENST00000442396 2987 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 RPL17P11-201ENST00000417593 544 ntBASIC16.23■□□□□ 0.19
VPS13AQ96RL7 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 AL022328.1-201ENST00000610050 478 ntBASIC16.23■□□□□ 0.19
VPS13AQ96RL7 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 TUFM-201ENST00000313511 2071 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 TEAD2-204ENST00000593945 2141 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 PC-204ENST00000524491 1714 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 HLA-B-249ENST00000412585 1547 ntAPPRIS P1 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 ACRV1-201ENST00000315608 1042 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 ITPA-202ENST00000399838 897 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 CHMP4BP1-201ENST00000556017 588 ntBASIC16.23■□□□□ 0.19
VPS13AQ96RL7 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 CCDC137-201ENST00000329214 2468 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 STK32C-204ENST00000368622 2010 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
VPS13AQ96RL7 HNRNPA1P48-201ENST00000562726 1377 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 CNST-202ENST00000366512 2422 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 BOLA3-201ENST00000295326 444 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 PPDPF-201ENST00000370177 627 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AL356441.1-201ENST00000452618 492 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AC020765.3-201ENST00000613051 740 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 TNFSF11-203ENST00000398795 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 ZNF211-203ENST00000299871 2577 ntAPPRIS ALT2 TSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AL109955.1-201ENST00000417346 1540 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AGER-203ENST00000375065 665 ntTSL 2 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 BOLA2P3-201ENST00000404566 256 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AL355334.1-201ENST00000417713 215 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AC083949.1-202ENST00000458490 552 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 LINC01336-201ENST00000503568 534 ntTSL 4 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AP006621.2-201ENST00000533938 284 ntTSL 3 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AC025154.1-201ENST00000552806 560 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 AC005695.3-201ENST00000614522 232 ntBASIC16.22■□□□□ 0.19
VPS13AQ96RL7 MADD-208ENST00000405573 1823 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
VPS13AQ96RL7 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms