Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 PTGDS-202ENST00000371625 807 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 C6orf48-203ENST00000375638 847 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 C6orf48-207ENST00000375642 962 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 ASGR1-202ENST00000380920 944 ntTSL 3 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 AL591684.3-201ENST00000605187 298 ntBASIC18.06■□□□□ 0.48
CCDC42Q96M95 NDUFA6-204ENST00000617763 1183 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 WAPL-202ENST00000298767 6333 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 ZNF213-206ENST00000574902 3208 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 ADGRA1-203ENST00000607359 6004 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 BACE2-203ENST00000347667 8764 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 TPT1-AS1-215ENST00000522673 1519 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 AC024909.3-201ENST00000611513 2257 ntBASIC18.06■□□□□ 0.48
CCDC42Q96M95 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 NCF1C-201ENST00000438382 1427 ntBASIC18.06■□□□□ 0.48
CCDC42Q96M95 AP005117.1-201ENST00000584346 1413 ntBASIC18.06■□□□□ 0.48
CCDC42Q96M95 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 MCF2L2-201ENST00000328913 4980 ntAPPRIS P2 TSL 5 BASIC18.06■□□□□ 0.48
CCDC42Q96M95 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC42Q96M95 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 SLC30A4-201ENST00000261867 7157 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 MEIS3-206ENST00000559524 1828 ntAPPRIS P3 TSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 MLEC-201ENST00000228506 6626 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 FRMPD4-201ENST00000380682 8465 ntAPPRIS P2 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 FTMT-201ENST00000321339 879 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 SPEG-204ENST00000396689 1274 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 NUS1P2-201ENST00000417358 873 ntBASIC18.05■□□□□ 0.48
CCDC42Q96M95 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 MYB-242ENST00000618728 3545 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 PSMC5-202ENST00000375812 1494 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 EYA2-208ENST00000497062 2384 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 RGN-203ENST00000397180 2257 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC42Q96M95 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC42Q96M95 TRIM14-201ENST00000341469 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 SLIT3-201ENST00000332966 4895 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 LMNA-202ENST00000361308 1713 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 TPD52L2-204ENST00000351424 2302 ntAPPRIS P4 TSL 2 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 KCNT1-214ENST00000631073 3948 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 HLA-A-204ENST00000396634 1868 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 MCL1-201ENST00000307940 1110 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 LINC01972-201ENST00000422271 553 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 ISCU-203ENST00000431221 799 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 BX005266.1-201ENST00000473402 457 ntBASIC18.04■□□□□ 0.48
CCDC42Q96M95 KRT18P21-201ENST00000515767 1272 ntBASIC18.04■□□□□ 0.48
CCDC42Q96M95 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 ZNF575-205ENST00000601282 1086 ntAPPRIS P1 TSL 2 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 AC064862.7-201ENST00000604520 867 ntBASIC18.04■□□□□ 0.48
CCDC42Q96M95 AL590326.2-201ENST00000625139 305 ntBASIC18.04■□□□□ 0.48
CCDC42Q96M95 COLGALT2-201ENST00000361927 5177 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC42Q96M95 SLC29A1-209ENST00000427851 2171 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 MAPK7-201ENST00000299612 2715 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 SNX33P1-201ENST00000592116 1762 ntBASIC18.04■□□□□ 0.48
CCDC42Q96M95 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 TUBA1C-201ENST00000301072 3001 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC42Q96M95 CHAD-201ENST00000258969 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC42Q96M95 WDR74-205ENST00000525752 1724 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC42Q96M95 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC42Q96M95 C14orf93-202ENST00000341470 2221 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms