Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 LSP1-201ENST00000311604 1699 ntAPPRIS P4 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 PRAMEF20-201ENST00000316412 1597 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 BCL2L11-201ENST00000308659 1522 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 ZNF259P1-201ENST00000407656 1365 ntBASIC16.06■□□□□ 0.16
VMP1Q96GC9 YDJC-202ENST00000398873 1066 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 RNA5SP415-201ENST00000517246 115 ntBASIC16.06■□□□□ 0.16
VMP1Q96GC9 SLC25A1P1-201ENST00000528351 927 ntBASIC16.06■□□□□ 0.16
VMP1Q96GC9 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 DHRS4-205ENST00000558263 1089 ntTSL 5 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 DHRS4L2-207ENST00000558753 556 ntTSL 2 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 AC145285.3-201ENST00000564603 959 ntBASIC16.06■□□□□ 0.16
VMP1Q96GC9 NME4-212ENST00000621774 904 ntTSL 3 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 OPA1-201ENST00000361150 6330 ntTSL 5 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 AP2A2-201ENST00000332231 4656 ntAPPRIS ALT1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 AC005052.1-201ENST00000625181 2492 ntBASIC16.06■□□□□ 0.16
VMP1Q96GC9 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 CUL3-202ENST00000344951 6592 ntTSL 2 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 LRRTM1-202ENST00000409148 2126 ntAPPRIS P1 TSL 4 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
VMP1Q96GC9 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC16.06■□□□□ 0.16
VMP1Q96GC9 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 RANBP3-220ENST00000591092 1783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 AC068888.1-203ENST00000546566 1650 ntTSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 RTN3-205ENST00000356000 2645 ntTSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 TLE2-202ENST00000426948 2406 ntTSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 HFE2-204ENST00000475797 1381 ntTSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 PLGRKT-201ENST00000223864 932 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 SLC4A1APP2-201ENST00000424054 1259 ntBASIC16.05■□□□□ 0.16
VMP1Q96GC9 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 Z83851.2-201ENST00000609564 659 ntBASIC16.05■□□□□ 0.16
VMP1Q96GC9 AL805961.1-202ENST00000641562 540 ntBASIC16.05■□□□□ 0.16
VMP1Q96GC9 AF228730.7-201ENST00000641842 219 ntBASIC16.05■□□□□ 0.16
VMP1Q96GC9 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 REPS1-208ENST00000450536 4537 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 ZDHHC24-201ENST00000310442 4721 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 WT1-209ENST00000530998 2421 ntTSL 2 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 PCMTD1-206ENST00000521344 1712 ntTSL 3 BASIC16.05■□□□□ 0.16
VMP1Q96GC9 RGN-202ENST00000352078 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
VMP1Q96GC9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 NEIL2-203ENST00000436750 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 GALNT6-201ENST00000356317 2809 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 TSNARE1-204ENST00000519651 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 ITGA3-202ENST00000320031 4888 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 FNDC1-201ENST00000297267 6552 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AC016396.2-201ENST00000562575 1417 ntBASIC16.04■□□□□ 0.16
VMP1Q96GC9 PPP1R21-202ENST00000294952 3142 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 RUSC1-203ENST00000368349 1968 ntAPPRIS P3 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 DIRC2-201ENST00000261038 3596 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 PDCL3-201ENST00000264254 1337 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 SEMA7A-201ENST00000261918 3885 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 SGF29-201ENST00000317058 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AQP12A-201ENST00000337801 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
VMP1Q96GC9 NABP1-203ENST00000409510 843 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AP000347.1-202ENST00000435868 847 ntBASIC16.04■□□□□ 0.16
VMP1Q96GC9 RPS15P9-201ENST00000494093 319 ntBASIC16.04■□□□□ 0.16
VMP1Q96GC9 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC16.04■□□□□ 0.16
VMP1Q96GC9 UNC93B6-202ENST00000528242 690 ntBASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 107.2 ms