Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 RAC2-204ENST00000406508 893 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AC241585.1-201ENST00000433527 519 ntBASIC16.19■□□□□ 0.18
LMX1AQ8TE12 TAF8-206ENST00000472818 719 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 C5orf66-202ENST00000507641 547 ntTSL 3 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 POLD4-211ENST00000539074 714 ntTSL 3 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AC067852.1-201ENST00000585572 594 ntTSL 4 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 RPS15-212ENST00000593052 629 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 SLC12A2-208ENST00000628403 3617 ntAPPRIS ALT2 TSL 5 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 TIMM50-202ENST00000544017 2572 ntAPPRIS P2 TSL 1 (best) BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC16.19■□□□□ 0.18
LMX1AQ8TE12 KRT8P39-201ENST00000396270 1433 ntBASIC16.19■□□□□ 0.18
LMX1AQ8TE12 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 HPN-202ENST00000392226 1783 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 LGALS12-205ENST00000425950 1789 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 AC073439.1-201ENST00000624121 1774 ntBASIC16.18■□□□□ 0.18
LMX1AQ8TE12 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 SUZ12-201ENST00000322652 4491 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 MRPL16-201ENST00000300151 1182 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 HLA-H-201ENST00000383620 1096 ntBASIC16.18■□□□□ 0.18
LMX1AQ8TE12 MIR661-201ENST00000384842 89 ntBASIC16.18■□□□□ 0.18
LMX1AQ8TE12 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 QPRT-203ENST00000562473 579 ntTSL 3 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 LINC02560-201ENST00000596379 459 ntBASIC16.18■□□□□ 0.18
LMX1AQ8TE12 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 ANTXR1-201ENST00000303714 5859 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 AL023806.1-201ENST00000603994 1649 ntBASIC16.18■□□□□ 0.18
LMX1AQ8TE12 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 LIPE-AS1-201ENST00000457234 1501 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 B3GNT3-201ENST00000318683 2226 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 KIF16B-203ENST00000408042 4640 ntTSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 MAP3K9-206ENST00000555993 4449 ntAPPRIS P3 TSL 1 (best) BASIC16.18■□□□□ 0.18
LMX1AQ8TE12 PHKA1-205ENST00000541944 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 FHL2-201ENST00000322142 1462 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 KIAA0895-208ENST00000440378 2441 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 PRDM5-203ENST00000428209 2338 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 CEP19-202ENST00000409690 2201 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 DPM2-202ENST00000373110 738 ntTSL 2 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 SNCA-205ENST00000394991 1290 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 CCDC159-201ENST00000458408 1062 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 AC007967.4-201ENST00000614700 386 ntBASIC16.17■□□□□ 0.18
LMX1AQ8TE12 SPTSSB-204ENST00000617024 1292 ntBASIC16.17■□□□□ 0.18
LMX1AQ8TE12 TMTC4-203ENST00000376234 3483 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 FOXO1B-201ENST00000504678 1527 ntBASIC16.17■□□□□ 0.18
LMX1AQ8TE12 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 PIP5K1A-207ENST00000441902 2297 ntTSL 2 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 GRAMD4P3-201ENST00000621665 1669 ntBASIC16.17■□□□□ 0.18
LMX1AQ8TE12 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 SLK-202ENST00000369755 7766 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 OR2C3-203ENST00000617752 2481 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
LMX1AQ8TE12 AFMID-201ENST00000327898 1700 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 EVA1A-205ENST00000410113 1747 ntAPPRIS P2 TSL 3 BASIC16.16■□□□□ 0.18
LMX1AQ8TE12 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms