Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 ADAM11-203ENST00000535346 2529 ntTSL 2 BASIC19.66■□□□□ 0.74
NKX2-3Q8TAU0 GABBR1-204ENST00000377016 4299 ntTSL 5 BASIC19.66■□□□□ 0.74
NKX2-3Q8TAU0 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-3Q8TAU0 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-3Q8TAU0 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
NKX2-3Q8TAU0 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 ADARB1-204ENST00000389863 3563 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 BRIX1-201ENST00000336767 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AL662844.4-201ENST00000606367 2838 ntBASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AMACR-202ENST00000382068 862 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 LINC00404-201ENST00000418660 428 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 RPUSD3-204ENST00000424438 1005 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AC106795.3-201ENST00000511650 547 ntTSL 4 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AC109635.5-201ENST00000533593 962 ntBASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AC051619.7-201ENST00000568314 623 ntBASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 BSG-215ENST00000618006 1329 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 USP4-201ENST00000265560 3126 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 STOX1-204ENST00000399169 3281 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 AC006538.1-201ENST00000567905 1585 ntBASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC19.65■□□□□ 0.74
NKX2-3Q8TAU0 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
NKX2-3Q8TAU0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC19.64■□□□□ 0.74
NKX2-3Q8TAU0 ARID4B-203ENST00000366603 5946 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CKS1B-202ENST00000368436 820 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 MEAF6-202ENST00000373073 603 ntTSL 3 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 GRAP-202ENST00000395635 834 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CXCL1-201ENST00000395761 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 ST7-OT4-203ENST00000466018 894 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 FAM86C2P-203ENST00000528684 1004 ntBASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 IGFLR1-205ENST00000588992 730 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 AC008761.3-201ENST00000624803 892 ntBASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 SENP6-202ENST00000370010 4644 ntAPPRIS P3 TSL 1 (best) BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 WDR90-201ENST00000293879 5488 ntAPPRIS P2 TSL 5 BASIC19.64■□□□□ 0.73
NKX2-3Q8TAU0 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 CAMKV-204ENST00000466940 1475 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 AP001189.5-201ENST00000637683 1413 ntTSL 5 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 GBGT1-201ENST00000372036 871 ntTSL 3 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 MIR943-201ENST00000401286 94 ntBASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 SYNGR1-205ENST00000406293 564 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 AL512356.2-201ENST00000546955 174 ntBASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 CD276-213ENST00000561213 2690 ntAPPRIS ALT2 TSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 RASSF8-AS1-202ENST00000500276 2610 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC19.63■□□□□ 0.73
NKX2-3Q8TAU0 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms