Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PSMG3-201ENST00000252329 1007 ntAPPRIS P1 TSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 HHATL-AS1-201ENST00000423165 557 ntTSL 4 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 FAM58DP-201ENST00000428076 619 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SBK3-202ENST00000612221 1270 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CYP51A1P2-201ENST00000419457 1499 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC093677.2-201ENST00000600169 1863 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TGDS-201ENST00000261296 1905 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SMPD3-211ENST00000568373 2073 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 CNOT9-208ENST00000542068 3259 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 INTS6-201ENST00000311234 3662 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 EPB41L3-202ENST00000342933 4270 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 FAM58CP-201ENST00000435741 640 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 REM2-202ENST00000536884 1331 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NLRX1-204ENST00000409991 3716 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 TRIM45-203ENST00000369464 3495 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AUTS2-218ENST00000615871 4511 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 EWSR1-202ENST00000332035 1989 ntAPPRIS ALT2 TSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 BSG-201ENST00000333511 1974 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 THNSL2-203ENST00000377254 1560 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NDRG4-202ENST00000356752 1375 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 NFS1-202ENST00000374085 2645 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 HSD17B12-201ENST00000278353 2571 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 AC068137.2-201ENST00000605408 478 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 REXO1L3P-201ENST00000622202 1288 ntBASIC5.19□□□□□ -1.58
SYNE1Q8NF91 FAM238C-204ENST00000640224 1268 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 KCNQ5-206ENST00000402622 6596 ntAPPRIS ALT2 TSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 VKORC1L1-201ENST00000360768 5899 ntAPPRIS P1 TSL 1 (best) BASIC5.19□□□□□ -1.58
SYNE1Q8NF91 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 CCDC115-201ENST00000259229 1646 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 FN1-208ENST00000426059 2388 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 RUNX3-203ENST00000399916 4340 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 HNF1A-211ENST00000543427 2819 ntTSL 5 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 SUN2-201ENST00000405018 4022 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 TIMM8BP1-201ENST00000452384 211 ntBASIC5.18□□□□□ -1.58
SYNE1Q8NF91 LINC02242-201ENST00000507298 641 ntTSL 5 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 NPRL2-201ENST00000232501 1700 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 SLC25A4-201ENST00000281456 4440 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 CYBA-210ENST00000569359 1415 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 ETV4-205ENST00000545954 1775 ntTSL 2 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 ITSN1-210ENST00000399353 3913 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 AL355312.1-201ENST00000407115 2176 ntBASIC5.18□□□□□ -1.58
SYNE1Q8NF91 ZNF302-201ENST00000423823 2590 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 TRMT6-201ENST00000203001 2327 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 ZNF346-208ENST00000511834 2306 ntTSL 5 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 RNF146-213ENST00000610153 2070 ntAPPRIS ALT1 TSL 2 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 MECP2-205ENST00000453960 1729 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 RTL8B-201ENST00000391440 2026 ntAPPRIS P1 BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC5.18□□□□□ -1.58
SYNE1Q8NF91 MIR943-201ENST00000401286 94 ntBASIC5.18□□□□□ -1.58
SYNE1Q8NF91 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC5.18□□□□□ -1.58
Retrieved 100 of 98,524 protein–RNA pairs in 45.3 ms