Protein–RNA interactions for Protein: Q8N205

SYNE4, Nesprin-4, humanhuman

Predictions only

Length 404 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE4Q8N205 PAX1-205ENST00000613128 5352 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 HLA-F-216ENST00000259951 1635 ntAPPRIS P4 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
SYNE4Q8N205 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC20.6■□□□□ 0.89
SYNE4Q8N205 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 PCDHB18P-201ENST00000524813 2368 ntBASIC20.59■□□□□ 0.89
SYNE4Q8N205 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 SLC29A2-206ENST00000546034 2509 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 NPM2-202ENST00000381530 925 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 ARSEP1-201ENST00000420443 635 ntBASIC20.59■□□□□ 0.89
SYNE4Q8N205 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 KRT17P7-201ENST00000451704 1104 ntBASIC20.59■□□□□ 0.89
SYNE4Q8N205 REEP4-207ENST00000523293 913 ntTSL 3 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 AURKB-214ENST00000585124 1227 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 AL589739.1-201ENST00000607720 493 ntBASIC20.59■□□□□ 0.89
SYNE4Q8N205 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
SYNE4Q8N205 CU639417.3-201ENST00000624240 1404 ntBASIC20.59■□□□□ 0.89
SYNE4Q8N205 AL603756.1-201ENST00000606511 2163 ntBASIC20.59■□□□□ 0.89
SYNE4Q8N205 EIF4H-201ENST00000265753 2679 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC20.59■□□□□ 0.89
SYNE4Q8N205 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 LBX2-AS1-201ENST00000548978 1852 ntTSL 3 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYNE4Q8N205 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYNE4Q8N205 CPZ-203ENST00000382480 2538 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SYNE4Q8N205 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 PTPDC1-202ENST00000375360 4517 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
SYNE4Q8N205 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 CBX7-202ENST00000401405 784 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SYNE4Q8N205 PTPA-213ENST00000419582 952 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
SYNE4Q8N205 MAGI2-AS3-208ENST00000446159 670 ntTSL 3 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 AC008378.1-201ENST00000521251 496 ntTSL 5 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 AC009133.1-203ENST00000569039 589 ntTSL 2 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 AC022167.4-201ENST00000570290 498 ntTSL 3 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 MRPS23-202ENST00000578444 580 ntTSL 2 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 SSH2-210ENST00000582084 560 ntTSL 3 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 RPS15-212ENST00000593052 629 ntTSL 2 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 AC004790.1-201ENST00000612686 536 ntBASIC20.58■□□□□ 0.89
SYNE4Q8N205 SERF2-217ENST00000630046 862 ntTSL 5 BASIC20.58■□□□□ 0.89
SYNE4Q8N205 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE4Q8N205 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.58■□□□□ 0.88
SYNE4Q8N205 PILRB-208ENST00000452089 2099 ntAPPRIS P2 TSL 2 BASIC20.58■□□□□ 0.88
SYNE4Q8N205 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.88
SYNE4Q8N205 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE4Q8N205 ISG20-201ENST00000306072 1856 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE4Q8N205 CLDN5-202ENST00000406028 2548 ntTSL 2 BASIC20.58■□□□□ 0.88
SYNE4Q8N205 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE4Q8N205 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
SYNE4Q8N205 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE4Q8N205 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC20.58■□□□□ 0.88
SYNE4Q8N205 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
SYNE4Q8N205 GRAMD4P3-201ENST00000621665 1669 ntBASIC20.58■□□□□ 0.88
SYNE4Q8N205 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CLEC18B-206ENST00000620745 1847 ntTSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CLN8-205ENST00000520991 1305 ntTSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 WBP2-201ENST00000254806 1944 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 AL031731.1-201ENST00000642131 2094 ntBASIC20.57■□□□□ 0.88
SYNE4Q8N205 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CUTA-202ENST00000374496 762 ntAPPRIS P3 TSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 PSMB8-203ENST00000395339 1025 ntTSL 3 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 EFHD1-202ENST00000409613 1156 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 AC093702.1-201ENST00000423433 367 ntTSL 3 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 U91328.1-201ENST00000437528 223 ntBASIC20.57■□□□□ 0.88
SYNE4Q8N205 SNRPB-202ENST00000438552 1008 ntAPPRIS P4 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 NECAP2-203ENST00000457722 935 ntTSL 2 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CDK4-206ENST00000549606 558 ntTSL 2 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 MAX-210ENST00000555419 765 ntTSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 AC138430.1-201ENST00000586064 5409 ntTSL 2 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 ATP6V0A2-201ENST00000330342 6542 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 PLEKHM2-201ENST00000375793 4004 ntAPPRIS ALT2 TSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 TVP23C-201ENST00000225576 1527 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 BCL2L2-PABPN1-203ENST00000557008 1366 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 RNPEPL1-201ENST00000270357 5658 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 ZSCAN10-207ENST00000575108 2247 ntTSL 2 BASIC20.57■□□□□ 0.88
SYNE4Q8N205 PTPN20-203ENST00000374342 1929 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
SYNE4Q8N205 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 RREB1-201ENST00000334984 5789 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
SYNE4Q8N205 FAM49B-224ENST00000522941 1700 ntTSL 5 BASIC20.56■□□□□ 0.88
SYNE4Q8N205 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 31.5 ms