Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 ANKRD23-203ENST00000418232 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 BEND4-202ENST00000504360 8692 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 AC092919.2-201ENST00000623631 1645 ntBASIC20.14■□□□□ 0.81
VPS53Q5VIR6 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 HMGA1P7-201ENST00000406908 502 ntBASIC20.14■□□□□ 0.81
VPS53Q5VIR6 IMP4-203ENST00000409935 958 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 PLA2G16-203ENST00000415826 1099 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 AC131097.3-202ENST00000439270 331 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 FBXL21-206ENST00000495672 589 ntTSL 4 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 AC091167.2-201ENST00000579581 588 ntBASIC20.14■□□□□ 0.81
VPS53Q5VIR6 PLA2G16-206ENST00000639271 957 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 CDKN1A-201ENST00000244741 2180 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 SERF2-203ENST00000381359 1931 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
VPS53Q5VIR6 STK35-201ENST00000381482 6685 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 FOXA1-201ENST00000250448 2862 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 DZIP1-203ENST00000361396 7418 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 WDR90-209ENST00000547944 1672 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 RAD1-208ENST00000628399 1678 ntTSL 3 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 DPM2-201ENST00000314392 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 TCAF2-203ENST00000425618 2448 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 R3HDML-201ENST00000217043 1377 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 PIGBOS1-201ENST00000436697 866 ntAPPRIS P2 TSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 AP3D1-201ENST00000345016 4870 ntAPPRIS P3 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 ASH1L-207ENST00000548830 1862 ntTSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 ZBTB10-202ENST00000426744 9878 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 HOXA5-201ENST00000222726 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC20.13■□□□□ 0.81
VPS53Q5VIR6 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 TUSC3-204ENST00000506802 1546 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 GIT2-202ENST00000354574 5387 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 AMT-206ENST00000458307 1860 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 PMS2P7-201ENST00000506558 1336 ntBASIC20.12■□□□□ 0.81
VPS53Q5VIR6 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 LINC01786-201ENST00000434139 268 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 CD63-210ENST00000550776 870 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 MIR4515-201ENST00000584082 81 ntBASIC20.12■□□□□ 0.81
VPS53Q5VIR6 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 H3F3B-208ENST00000589599 576 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 CYP2A7P1-201ENST00000595391 815 ntBASIC20.12■□□□□ 0.81
VPS53Q5VIR6 AC023141.13-201ENST00000604991 943 ntBASIC20.12■□□□□ 0.81
VPS53Q5VIR6 AC013467.2-201ENST00000605472 835 ntBASIC20.12■□□□□ 0.81
VPS53Q5VIR6 ACY1-212ENST00000635797 1294 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 TLE2-204ENST00000455444 2253 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 LY6K-205ENST00000522591 2724 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 HNRNPU-205ENST00000444376 6827 ntAPPRIS P3 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 CHGA-201ENST00000216492 2063 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
VPS53Q5VIR6 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
VPS53Q5VIR6 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
VPS53Q5VIR6 GLS2-216ENST00000610413 2296 ntTSL 5 BASIC20.11■□□□□ 0.81
VPS53Q5VIR6 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS53Q5VIR6 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
VPS53Q5VIR6 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
VPS53Q5VIR6 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 49.1 ms