Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 SLC5A10-205ENST00000417251 1984 ntTSL 2 BASIC11.81□□□□□ -0.52
PRKDCP78527 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 PRKACG-201ENST00000377276 1585 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
PRKDCP78527 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC11.81□□□□□ -0.52
PRKDCP78527 AL133499.1-201ENST00000596207 608 ntBASIC11.81□□□□□ -0.52
PRKDCP78527 CBLN2-201ENST00000269503 2945 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 RNF139-201ENST00000303545 2637 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
PRKDCP78527 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
PRKDCP78527 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 TPD52L2-207ENST00000369927 1094 ntTSL 4 BASIC11.8□□□□□ -0.52
PRKDCP78527 TREM2-203ENST00000373122 1012 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 NGDN-202ENST00000408901 1143 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 AC025165.3-201ENST00000471530 679 ntTSL 5 BASIC11.8□□□□□ -0.52
PRKDCP78527 AC012531.3-201ENST00000513209 777 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 IQSEC3P1-201ENST00000538799 536 ntBASIC11.8□□□□□ -0.52
PRKDCP78527 C12orf73-211ENST00000553183 660 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 AC011447.3-204ENST00000585498 883 ntTSL 2 BASIC11.8□□□□□ -0.52
PRKDCP78527 ZNF790-AS1-204ENST00000589556 650 ntTSL 2 BASIC11.8□□□□□ -0.52
PRKDCP78527 AC133539.2-201ENST00000604757 467 ntBASIC11.8□□□□□ -0.52
PRKDCP78527 AP001350.2-201ENST00000625104 1094 ntBASIC11.8□□□□□ -0.52
PRKDCP78527 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 SEMA3B-209ENST00000456560 2221 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 CCKAR-201ENST00000295589 1720 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 APH1A-204ENST00000414276 1718 ntTSL 2 BASIC11.8□□□□□ -0.52
PRKDCP78527 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC11.8□□□□□ -0.52
PRKDCP78527 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 CHRM2-201ENST00000320658 1694 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 RN7SL181P-201ENST00000462921 277 ntBASIC11.8□□□□□ -0.52
PRKDCP78527 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 AC022858.1-201ENST00000521685 685 ntTSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 CFL1-206ENST00000527344 962 ntTSL 2 BASIC11.8□□□□□ -0.52
PRKDCP78527 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC11.8□□□□□ -0.52
PRKDCP78527 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC11.8□□□□□ -0.52
PRKDCP78527 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 NR4A2-210ENST00000429376 1571 ntTSL 5 BASIC11.8□□□□□ -0.52
PRKDCP78527 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 NEUROD2-201ENST00000302584 2041 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 C1QTNF1-201ENST00000311661 2624 ntTSL 2 BASIC11.8□□□□□ -0.52
PRKDCP78527 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC11.8□□□□□ -0.52
PRKDCP78527 TSPAN7-202ENST00000378482 1909 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 GFI1-202ENST00000370332 2855 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 MIOX-201ENST00000216075 1130 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 AC008443.1-201ENST00000511331 1000 ntTSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC11.8□□□□□ -0.52
PRKDCP78527 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.8□□□□□ -0.52
PRKDCP78527 RHOXF1P1-202ENST00000635473 501 ntBASIC11.8□□□□□ -0.52
PRKDCP78527 ZFYVE28-210ENST00000515169 1590 ntTSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC11.8□□□□□ -0.52
PRKDCP78527 AC006001.1-201ENST00000325130 474 ntBASIC11.79□□□□□ -0.52
PRKDCP78527 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 RAB34-210ENST00000436730 863 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
PRKDCP78527 AL355864.2-201ENST00000447420 863 ntBASIC11.79□□□□□ -0.52
PRKDCP78527 SNHG11-212ENST00000449351 954 ntTSL 5 BASIC11.79□□□□□ -0.52
PRKDCP78527 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC11.79□□□□□ -0.52
PRKDCP78527 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 HSF2-201ENST00000368455 2549 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 CCDC17-202ENST00000421127 2216 ntAPPRIS ALT2 TSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 RANBP3-201ENST00000034275 1762 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 PRR5-201ENST00000006251 1767 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 PCCA-201ENST00000376279 2418 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC11.79□□□□□ -0.52
PRKDCP78527 CALD1-204ENST00000417172 1915 ntTSL 5 BASIC11.79□□□□□ -0.52
PRKDCP78527 AC079807.2-203ENST00000417692 656 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 PFN2-202ENST00000423691 911 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 LY6E-208ENST00000520531 490 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 CRTC3-AS1-202ENST00000559531 657 ntTSL 3 BASIC11.79□□□□□ -0.52
PRKDCP78527 MIR4741-201ENST00000579822 90 ntBASIC11.79□□□□□ -0.52
PRKDCP78527 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 POLR3E-209ENST00000564209 2464 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 CHMP5-201ENST00000223500 1477 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 AC012317.2-201ENST00000623305 2251 ntBASIC11.79□□□□□ -0.52
PRKDCP78527 PDCD5-203ENST00000419343 1799 ntTSL 2 BASIC11.79□□□□□ -0.52
PRKDCP78527 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 TMEM107-204ENST00000437139 747 ntAPPRIS ALT1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC11.79□□□□□ -0.52
PRKDCP78527 PENK-202ENST00000451791 1029 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.52
PRKDCP78527 HTATIP2-205ENST00000530266 713 ntTSL 3 BASIC11.79□□□□□ -0.52
PRKDCP78527 TCL1A-208ENST00000556450 872 ntAPPRIS P1 TSL 3 BASIC11.79□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 41.5 ms