Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HDAC4P56524 CKLF-204ENST00000362093 412 ntAPPRIS ALT2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 SYS1-202ENST00000372727 813 ntAPPRIS P1 TSL 3 BASIC17.44■□□□□ 0.38
HDAC4P56524 DDT-204ENST00000404092 805 ntTSL 3 BASIC17.44■□□□□ 0.38
HDAC4P56524 AL049612.1-201ENST00000427017 694 ntTSL 5 BASIC17.44■□□□□ 0.38
HDAC4P56524 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC17.44■□□□□ 0.38
HDAC4P56524 BX890604.1-208ENST00000490920 726 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 AL133375.1-201ENST00000500590 980 ntTSL 5 BASIC17.44■□□□□ 0.38
HDAC4P56524 C1QB-203ENST00000509305 1254 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 AC018845.2-201ENST00000568326 409 ntBASIC17.44■□□□□ 0.38
HDAC4P56524 NUTF2-206ENST00000569436 1119 ntAPPRIS P1 TSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 PIN1-206ENST00000587625 878 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 GIPC1-213ENST00000591349 1068 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 AP001350.2-201ENST00000625104 1094 ntBASIC17.44■□□□□ 0.38
HDAC4P56524 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 SH3BP5-206ENST00000426925 2190 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 FAM57B-202ENST00000380495 2313 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.44■□□□□ 0.38
HDAC4P56524 CHRNE-201ENST00000293780 2455 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 TSSK2-201ENST00000399635 1816 ntAPPRIS P1 BASIC17.44■□□□□ 0.38
HDAC4P56524 KRT23-201ENST00000209718 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 TMUB2-204ENST00000538716 1953 ntAPPRIS ALT1 TSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC17.44■□□□□ 0.38
HDAC4P56524 AHR-201ENST00000242057 6276 ntAPPRIS P1 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 MBNL1-201ENST00000282486 6422 ntAPPRIS P4 TSL 5 BASIC17.44■□□□□ 0.38
HDAC4P56524 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC17.44■□□□□ 0.38
HDAC4P56524 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 KCNQ2-236ENST00000637193 2983 ntTSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 TUBGCP6-204ENST00000439308 6078 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 CACNB3-203ENST00000540990 1814 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 PF4-201ENST00000296029 604 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 NDUFA3-201ENST00000303553 379 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 RPP38-203ENST00000378202 1030 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 AC010226.1-202ENST00000508517 539 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC17.43■□□□□ 0.38
HDAC4P56524 RPL28-209ENST00000560055 670 ntTSL 3 BASIC17.43■□□□□ 0.38
HDAC4P56524 AC023355.1-201ENST00000560323 752 ntTSL 3 BASIC17.43■□□□□ 0.38
HDAC4P56524 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC17.43■□□□□ 0.38
HDAC4P56524 AC002398.2-201ENST00000587767 660 ntTSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 AQP6-205ENST00000618286 829 ntTSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 TRPC4AP-202ENST00000451813 3138 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 CDK2-204ENST00000553376 1725 ntTSL 5 BASIC17.43■□□□□ 0.38
HDAC4P56524 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 TRAPPC3-210ENST00000617904 1305 ntTSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 C17orf62-201ENST00000306645 2093 ntAPPRIS P1 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 AL031731.1-201ENST00000642131 2094 ntBASIC17.43■□□□□ 0.38
HDAC4P56524 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC17.43■□□□□ 0.38
HDAC4P56524 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC17.43■□□□□ 0.38
HDAC4P56524 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 IGHM-202ENST00000637539 1683 ntAPPRIS P5 BASIC17.42■□□□□ 0.38
HDAC4P56524 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 ZNF346-202ENST00000503039 2774 ntTSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 PHF1-202ENST00000374516 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 PRKCSH-205ENST00000587327 2189 ntAPPRIS ALT2 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 SLC9A3P2-201ENST00000447821 2021 ntBASIC17.42■□□□□ 0.38
HDAC4P56524 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 GGT4P-201ENST00000623672 1708 ntBASIC17.42■□□□□ 0.38
HDAC4P56524 EIF4H-202ENST00000353999 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 LIFR-202ENST00000453190 4253 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 ANAPC13-206ENST00000514612 1420 ntAPPRIS P1 TSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 SELENOH-201ENST00000388857 833 ntAPPRIS P2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 IGHV3-15-201ENST00000390603 437 ntAPPRIS P1 BASIC17.42■□□□□ 0.38
HDAC4P56524 SGO2-202ENST00000409203 1041 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 CDK2AP2P3-201ENST00000422476 372 ntBASIC17.42■□□□□ 0.38
HDAC4P56524 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 TPD52L1-211ENST00000532429 1022 ntTSL 2 BASIC17.42■□□□□ 0.38
HDAC4P56524 CD63-210ENST00000550776 870 ntTSL 5 BASIC17.42■□□□□ 0.38
HDAC4P56524 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.42■□□□□ 0.38
HDAC4P56524 ABHD17A-204ENST00000590661 1079 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 AL645728.2-201ENST00000641974 660 ntBASIC17.42■□□□□ 0.38
HDAC4P56524 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
HDAC4P56524 ALOX12P2-203ENST00000570921 1945 ntBASIC17.42■□□□□ 0.38
HDAC4P56524 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC17.42■□□□□ 0.38
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms