Protein–RNA interactions for Protein: P49916

LIG3, DNA ligase 3, humanhuman

Predictions only

Length 1,009 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3P49916 MTUS2-205ENST00000542829 1165 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 AC004801.5-202ENST00000546804 530 ntTSL 4 BASIC17.64■□□□□ 0.41
LIG3P49916 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC17.64■□□□□ 0.41
LIG3P49916 LINC01956-202ENST00000584273 612 ntTSL 3 BASIC17.64■□□□□ 0.41
LIG3P49916 SLC25A6P4-201ENST00000586535 553 ntBASIC17.64■□□□□ 0.41
LIG3P49916 MUC1-224ENST00000611577 1023 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 AD001527.2-201ENST00000622994 785 ntBASIC17.64■□□□□ 0.41
LIG3P49916 KCNC2-207ENST00000548513 3026 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 GSS-201ENST00000216951 1922 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 CACFD1-206ENST00000540581 2880 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
LIG3P49916 SIGLEC10-201ENST00000339313 2256 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 AP1AR-201ENST00000274000 2902 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 AC074389.1-201ENST00000382528 1423 ntTSL 2 BASIC17.64■□□□□ 0.41
LIG3P49916 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC17.64■□□□□ 0.41
LIG3P49916 RFWD2-204ENST00000367669 3033 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
LIG3P49916 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 LINGO1-201ENST00000355300 3055 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 GPR137-212ENST00000539851 1843 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 HDAC5-201ENST00000225983 5326 ntAPPRIS P3 TSL 5 BASIC17.63■□□□□ 0.41
LIG3P49916 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 RBCK1-206ENST00000400247 790 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 AC099669.1-201ENST00000457331 456 ntTSL 3 BASIC17.63■□□□□ 0.41
LIG3P49916 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 MOK-208ENST00000519058 917 ntTSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 AL662844.1-201ENST00000546340 181 ntBASIC17.63■□□□□ 0.41
LIG3P49916 ATP5G2-204ENST00000549164 745 ntAPPRIS P1 TSL 3 BASIC17.63■□□□□ 0.41
LIG3P49916 AC068594.1-202ENST00000581657 749 ntTSL 3 BASIC17.63■□□□□ 0.41
LIG3P49916 ATP5G2-209ENST00000602871 668 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 Z94160.2-201ENST00000609322 910 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 CCDC120-203ENST00000536628 2381 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 TAS1R1-201ENST00000333172 2892 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 TERF1-201ENST00000276602 3268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 SLC34A2-202ENST00000503434 2174 ntAPPRIS ALT2 TSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 RNF32-201ENST00000311822 1842 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC17.63■□□□□ 0.41
LIG3P49916 SATB2-206ENST00000457245 2656 ntAPPRIS P1 TSL 2 BASIC17.63■□□□□ 0.41
LIG3P49916 NXN-210ENST00000575801 2681 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 UBQLN1-201ENST00000257468 2299 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 DCLK2-204ENST00000506325 2298 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
LIG3P49916 CYTH2-214ENST00000641098 2721 ntAPPRIS ALT1 BASIC17.63■□□□□ 0.41
LIG3P49916 SPATA20-201ENST00000006658 2719 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
LIG3P49916 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 PMPCAP1-201ENST00000508114 1576 ntBASIC17.62■□□□□ 0.41
LIG3P49916 PC-208ENST00000529047 1607 ntTSL 3 BASIC17.62■□□□□ 0.41
LIG3P49916 AC099063.4-201ENST00000641099 1602 ntBASIC17.62■□□□□ 0.41
LIG3P49916 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LIG3P49916 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 MICALL1-201ENST00000215957 4710 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LIG3P49916 TCP11L2-203ENST00000547153 1788 ntTSL 2 BASIC17.62■□□□□ 0.41
LIG3P49916 NDUFB9-201ENST00000276689 711 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC17.62■□□□□ 0.41
LIG3P49916 IGF2-206ENST00000418738 934 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 SART3-203ENST00000546611 1184 ntBASIC17.62■□□□□ 0.41
LIG3P49916 COX5A-202ENST00000562233 441 ntTSL 3 BASIC17.62■□□□□ 0.41
LIG3P49916 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC17.62■□□□□ 0.41
LIG3P49916 AC064862.7-201ENST00000604520 867 ntBASIC17.62■□□□□ 0.41
LIG3P49916 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
LIG3P49916 IZUMO4-213ENST00000620263 947 ntTSL 3 BASIC17.62■□□□□ 0.41
LIG3P49916 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC17.62■□□□□ 0.41
LIG3P49916 COL8A2-202ENST00000397799 4670 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
LIG3P49916 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
LIG3P49916 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
LIG3P49916 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
LIG3P49916 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
LIG3P49916 AL049757.1-201ENST00000616842 1596 ntBASIC17.62■□□□□ 0.41
LIG3P49916 KIAA1211-201ENST00000264229 4109 ntAPPRIS P2 TSL 2 BASIC17.62■□□□□ 0.41
LIG3P49916 ASB16-AS1-201ENST00000585457 2213 ntTSL 2 BASIC17.62■□□□□ 0.41
LIG3P49916 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 SHISA6-203ENST00000432116 7518 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
LIG3P49916 NFATC4-231ENST00000557451 5613 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 WLS-205ENST00000370976 2332 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 ASTN2-201ENST00000288520 2356 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 SYT17-201ENST00000355377 3081 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 CLIC6-202ENST00000360731 3860 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 TOM1L2-203ENST00000395739 1766 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 UBE3D-203ENST00000369747 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC17.61■□□□□ 0.41
LIG3P49916 RDH13-223ENST00000610356 1931 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
LIG3P49916 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC17.61■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 33.2 ms