Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 RHCE-205ENST00000349438 1235 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 OLR1-203ENST00000432556 950 ntTSL 2 BASIC19.9■□□□□ 0.78
BRCA1P38398 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC19.9■□□□□ 0.78
BRCA1P38398 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC19.9■□□□□ 0.78
BRCA1P38398 PNOC-204ENST00000522209 1007 ntTSL 2 BASIC19.9■□□□□ 0.78
BRCA1P38398 KC6-205ENST00000599934 556 ntTSL 4 BASIC19.9■□□□□ 0.78
BRCA1P38398 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC19.9■□□□□ 0.78
BRCA1P38398 PCGF6-202ENST00000369847 2230 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
BRCA1P38398 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC19.89■□□□□ 0.78
BRCA1P38398 MSTO2P-201ENST00000314835 1709 ntBASIC19.89■□□□□ 0.78
BRCA1P38398 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.89■□□□□ 0.77
BRCA1P38398 TNXA-203ENST00000507684 2038 ntBASIC19.89■□□□□ 0.77
BRCA1P38398 TMEM161A-201ENST00000162044 1820 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC19.89■□□□□ 0.77
BRCA1P38398 FMR1-207ENST00000439526 3699 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 NKX3-1-202ENST00000523261 713 ntAPPRIS ALT2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC19.89■□□□□ 0.77
BRCA1P38398 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC19.89■□□□□ 0.77
BRCA1P38398 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC19.89■□□□□ 0.77
BRCA1P38398 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC19.89■□□□□ 0.77
BRCA1P38398 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 ELP5-214ENST00000574993 2209 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 GGT4P-201ENST00000623672 1708 ntBASIC19.89■□□□□ 0.77
BRCA1P38398 PHGDH-202ENST00000369409 1882 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC19.89■□□□□ 0.77
BRCA1P38398 DEF6-201ENST00000316637 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
BRCA1P38398 PANK2-209ENST00000621507 1763 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 CYP2R1-201ENST00000334636 2235 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 APEH-202ENST00000438011 2249 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 PRDX5-203ENST00000352435 596 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 MIR326-201ENST00000362220 95 ntBASIC19.88■□□□□ 0.77
BRCA1P38398 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
BRCA1P38398 LINC01806-201ENST00000436506 765 ntTSL 2 BASIC19.88■□□□□ 0.77
BRCA1P38398 KRT8P37-201ENST00000451609 1420 ntBASIC19.88■□□□□ 0.77
BRCA1P38398 AC091804.1-201ENST00000486888 567 ntBASIC19.88■□□□□ 0.77
BRCA1P38398 LINC00928-204ENST00000561201 1123 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 AL359711.2-201ENST00000563105 872 ntBASIC19.88■□□□□ 0.77
BRCA1P38398 AGAP1-213ENST00000619456 1057 ntTSL 5 BASIC19.88■□□□□ 0.77
BRCA1P38398 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 MAPK14-204ENST00000468133 1376 ntTSL 2 BASIC19.88■□□□□ 0.77
BRCA1P38398 TMEM259-209ENST00000592590 2509 ntTSL 5 BASIC19.88■□□□□ 0.77
BRCA1P38398 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 FOXD4L4-201ENST00000377413 2230 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
BRCA1P38398 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 INSM2-201ENST00000307169 3013 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
BRCA1P38398 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC19.88■□□□□ 0.77
BRCA1P38398 AL929472.3-201ENST00000433474 700 ntTSL 5 BASIC19.88■□□□□ 0.77
BRCA1P38398 AC104596.1-201ENST00000507826 579 ntTSL 4 BASIC19.88■□□□□ 0.77
BRCA1P38398 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC19.88■□□□□ 0.77
BRCA1P38398 ATF5-205ENST00000600336 682 ntTSL 2 BASIC19.88■□□□□ 0.77
BRCA1P38398 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC19.88■□□□□ 0.77
BRCA1P38398 AC243829.4-204ENST00000616926 1115 ntTSL 5 BASIC19.88■□□□□ 0.77
BRCA1P38398 ORAI2-204ENST00000473939 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 HSPB8-201ENST00000281938 2152 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
BRCA1P38398 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
BRCA1P38398 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.87■□□□□ 0.77
BRCA1P38398 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 HYAL1-204ENST00000395144 2081 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 CSK-201ENST00000220003 2767 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC19.87■□□□□ 0.77
BRCA1P38398 SDCBP2-202ENST00000360779 1519 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 AL121601.1-201ENST00000426367 326 ntTSL 2 BASIC19.87■□□□□ 0.77
BRCA1P38398 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC19.87■□□□□ 0.77
BRCA1P38398 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC19.87■□□□□ 0.77
BRCA1P38398 FBXL12-211ENST00000591009 1005 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 SPIB-207ENST00000597855 564 ntTSL 4 BASIC19.87■□□□□ 0.77
BRCA1P38398 Metazoa_SRP.166-201ENST00000612530 253 ntBASIC19.87■□□□□ 0.77
BRCA1P38398 FP565260.5-201ENST00000623188 479 ntTSL 3 BASIC19.87■□□□□ 0.77
BRCA1P38398 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC19.87■□□□□ 0.77
BRCA1P38398 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 TMEM25-202ENST00000354064 1965 ntTSL 2 BASIC19.87■□□□□ 0.77
BRCA1P38398 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
BRCA1P38398 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
BRCA1P38398 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC19.86■□□□□ 0.77
BRCA1P38398 GPT-202ENST00000394955 1885 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 AGRP-201ENST00000290953 764 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 HIST1H2AJ-201ENST00000333151 387 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
BRCA1P38398 PEX13-202ENST00000401576 1108 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 SLC25A24P2-201ENST00000415059 510 ntBASIC19.86■□□□□ 0.77
BRCA1P38398 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC19.86■□□□□ 0.77
BRCA1P38398 AC120045.2-201ENST00000567334 178 ntBASIC19.86■□□□□ 0.77
BRCA1P38398 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 COPS9-205ENST00000607357 418 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 FBLN7-203ENST00000409450 1394 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC19.86■□□□□ 0.77
BRCA1P38398 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
BRCA1P38398 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC19.86■□□□□ 0.77
BRCA1P38398 FBP1-203ENST00000415431 1487 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms