Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC027601.2-201ENST00000571085 805 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 CCT6A-202ENST00000335503 2529 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 C14orf28-201ENST00000325192 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 CYP4F24P-201ENST00000586049 1580 ntBASIC19.68■□□□□ 0.74
COL4A5P29400 TTC24-202ENST00000368237 1969 ntAPPRIS P1 TSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A5P29400 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 APP-203ENST00000354192 3167 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 CCNJ-203ENST00000465148 2677 ntAPPRIS P1 TSL 2 BASIC19.68■□□□□ 0.74
COL4A5P29400 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 GPAA1P2-202ENST00000606848 1787 ntBASIC19.68■□□□□ 0.74
COL4A5P29400 RBFOX3-212ENST00000584778 1547 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 KCNK7-201ENST00000340313 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 AC092933.1-201ENST00000393644 945 ntBASIC19.68■□□□□ 0.74
COL4A5P29400 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 AP000345.1-201ENST00000454863 569 ntTSL 4 BASIC19.68■□□□□ 0.74
COL4A5P29400 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC19.68■□□□□ 0.74
COL4A5P29400 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
COL4A5P29400 AL163974.1-201ENST00000554540 466 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC19.68■□□□□ 0.74
COL4A5P29400 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC19.68■□□□□ 0.74
COL4A5P29400 BTNL10-201ENST00000595971 695 ntBASIC19.68■□□□□ 0.74
COL4A5P29400 HOXC5-201ENST00000312492 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 CIART-203ENST00000369095 1433 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
COL4A5P29400 GDF10-201ENST00000580279 2458 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 COPS3-212ENST00000539941 1699 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A5P29400 GOLGA7-204ENST00000520817 1984 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 ABLIM2-202ENST00000361581 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 TAF8-204ENST00000456846 1293 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A5P29400 YIF1B-214ENST00000591784 940 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A5P29400 TPTE2P2-205ENST00000606711 505 ntTSL 5 BASIC19.67■□□□□ 0.74
COL4A5P29400 NOP16-209ENST00000618911 1087 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 RBM7-201ENST00000375490 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 C12orf65-202ENST00000366329 1901 ntAPPRIS P2 TSL 2 BASIC19.67■□□□□ 0.74
COL4A5P29400 MBOAT1-201ENST00000324607 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC19.67■□□□□ 0.74
COL4A5P29400 HPS3-202ENST00000460120 2745 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A5P29400 SLC25A36-201ENST00000324194 1301 ntAPPRIS ALT1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 GRB10-205ENST00000401949 2627 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC19.67■□□□□ 0.74
COL4A5P29400 MRPS30-202ENST00000507110 1678 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
COL4A5P29400 DDX17-211ENST00000640332 2190 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 DDX17-212ENST00000640668 2196 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC19.66■□□□□ 0.74
COL4A5P29400 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 TINF2-208ENST00000558566 1874 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL4A5P29400 SLC35A1-202ENST00000369556 1720 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL4A5P29400 PROC-201ENST00000234071 1773 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 SHBG-202ENST00000380450 1271 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 SELENOM-202ENST00000402395 1054 ntAPPRIS P2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 RCHY1-210ENST00000513257 759 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 GCHFR-206ENST00000561160 572 ntTSL 3 BASIC19.66■□□□□ 0.74
COL4A5P29400 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A5P29400 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
COL4A5P29400 TXNRD2-218ENST00000542719 2024 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 OLFM2-203ENST00000590841 1665 ntTSL 2 BASIC19.66■□□□□ 0.74
COL4A5P29400 TUBB1P2-201ENST00000422712 1306 ntBASIC19.66■□□□□ 0.74
COL4A5P29400 TUBB1P1-201ENST00000503144 1300 ntBASIC19.66■□□□□ 0.74
COL4A5P29400 AC134043.2-201ENST00000624206 2238 ntBASIC19.66■□□□□ 0.74
COL4A5P29400 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A5P29400 PRDM12-201ENST00000253008 2476 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
COL4A5P29400 FGFR4-203ENST00000393648 2733 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
COL4A5P29400 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC19.66■□□□□ 0.74
COL4A5P29400 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 KRTAP10-2-201ENST00000391621 1149 ntAPPRIS P1 BASIC19.65■□□□□ 0.74
COL4A5P29400 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC19.65■□□□□ 0.74
COL4A5P29400 AL139010.1-201ENST00000454878 894 ntBASIC19.65■□□□□ 0.74
COL4A5P29400 AC244093.1-201ENST00000610837 814 ntBASIC19.65■□□□□ 0.74
COL4A5P29400 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC19.65■□□□□ 0.74
COL4A5P29400 ABBA01031660.1-201ENST00000635219 756 ntBASIC19.65■□□□□ 0.74
COL4A5P29400 AC114737.3-201ENST00000636708 570 ntTSL 4 BASIC19.65■□□□□ 0.74
COL4A5P29400 DHRS1-201ENST00000288111 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 PACS1-209ENST00000529757 1688 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A5P29400 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.65■□□□□ 0.74
COL4A5P29400 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC19.65■□□□□ 0.74
COL4A5P29400 FGFBP1-201ENST00000382333 1359 ntAPPRIS P1 TSL 3 BASIC19.65■□□□□ 0.74
COL4A5P29400 AC020907.1-201ENST00000616460 1350 ntBASIC19.65■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 65.7 ms