Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 BANF1-201ENST00000312175 1155 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC14.53□□□□□ -0.08
COL8A1P27658 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
COL8A1P27658 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.53□□□□□ -0.08
COL8A1P27658 MIR1908-201ENST00000410394 80 ntBASIC14.53□□□□□ -0.08
COL8A1P27658 MTRF1LP2-201ENST00000506027 1122 ntBASIC14.53□□□□□ -0.08
COL8A1P27658 SPDYE18-201ENST00000510091 1050 ntBASIC14.53□□□□□ -0.08
COL8A1P27658 FUZ-207ENST00000526575 482 ntTSL 4 BASIC14.53□□□□□ -0.08
COL8A1P27658 NEIL2-207ENST00000528323 998 ntTSL 2 BASIC14.53□□□□□ -0.08
COL8A1P27658 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC14.53□□□□□ -0.08
COL8A1P27658 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC14.53□□□□□ -0.08
COL8A1P27658 ORC6-206ENST00000568364 888 ntTSL 5 BASIC14.53□□□□□ -0.08
COL8A1P27658 AC004477.1-202ENST00000584428 539 ntTSL 2 BASIC14.53□□□□□ -0.08
COL8A1P27658 WT1-AS_2.1-201ENST00000613208 137 ntBASIC14.53□□□□□ -0.08
COL8A1P27658 AL136531.2-202ENST00000617804 573 ntAPPRIS P1 TSL 4 BASIC14.53□□□□□ -0.08
COL8A1P27658 MIR6869-201ENST00000619434 62 ntBASIC14.53□□□□□ -0.08
COL8A1P27658 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 WAC-202ENST00000347934 2839 ntTSL 5 BASIC14.53□□□□□ -0.08
COL8A1P27658 RNF121-201ENST00000361756 2625 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 KRT5-201ENST00000252242 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
COL8A1P27658 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 DMRT3-201ENST00000190165 2183 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 RABL2A-204ENST00000393167 2179 ntAPPRIS P3 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 BICD1-207ENST00000551848 1962 ntBASIC14.53□□□□□ -0.08
COL8A1P27658 PPT2-246ENST00000375137 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
COL8A1P27658 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL8A1P27658 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC14.52□□□□□ -0.08
COL8A1P27658 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL8A1P27658 BEGAIN-211ENST00000637646 2911 ntTSL 5 BASIC14.52□□□□□ -0.08
COL8A1P27658 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL8A1P27658 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
COL8A1P27658 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.08
COL8A1P27658 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.52□□□□□ -0.08
COL8A1P27658 PDE4A-202ENST00000344979 2579 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
COL8A1P27658 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC14.52□□□□□ -0.08
COL8A1P27658 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC14.52□□□□□ -0.08
COL8A1P27658 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC14.52□□□□□ -0.08
COL8A1P27658 RETREG1-201ENST00000306320 3268 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
COL8A1P27658 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC14.52□□□□□ -0.08
COL8A1P27658 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC14.52□□□□□ -0.08
COL8A1P27658 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC14.52□□□□□ -0.08
COL8A1P27658 POLD4-201ENST00000312419 918 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.09
COL8A1P27658 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 AL353597.1-201ENST00000414875 998 ntTSL 5 BASIC14.52□□□□□ -0.09
COL8A1P27658 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 AP001007.1-201ENST00000526796 645 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 AURKB-202ENST00000534871 1167 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 AC005342.2-201ENST00000544163 315 ntTSL 3 BASIC14.52□□□□□ -0.09
COL8A1P27658 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC14.52□□□□□ -0.09
COL8A1P27658 TMEM219-203ENST00000561899 1249 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC14.52□□□□□ -0.09
COL8A1P27658 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.52□□□□□ -0.09
COL8A1P27658 CTBP2P3-201ENST00000585629 1255 ntBASIC14.52□□□□□ -0.09
COL8A1P27658 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC14.52□□□□□ -0.09
COL8A1P27658 RN7SL828P-201ENST00000607615 303 ntBASIC14.52□□□□□ -0.09
COL8A1P27658 AC244093.1-201ENST00000610837 814 ntBASIC14.52□□□□□ -0.09
COL8A1P27658 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC14.52□□□□□ -0.09
COL8A1P27658 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 NBPF11-205ENST00000615281 5494 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 PELI2-201ENST00000267460 5909 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 ZNF500-201ENST00000219478 5880 ntAPPRIS P1 TSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 RSPO4-201ENST00000217260 2707 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 LINC01657-201ENST00000457217 1809 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 EPHX1-206ENST00000614058 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 ANKRD17-201ENST00000330838 7734 ntAPPRIS ALT2 TSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 TP53I3-202ENST00000335934 1635 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
COL8A1P27658 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.52□□□□□ -0.09
COL8A1P27658 STAC3-206ENST00000554578 1580 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 CDHR1-201ENST00000332904 2694 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 NTRK1-203ENST00000392302 2609 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
COL8A1P27658 KMT5A-201ENST00000330479 3069 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 SAMD11-210ENST00000616016 2391 ntTSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 SAMD11-215ENST00000618779 2368 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 ITGAV-202ENST00000374907 6903 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 RPS5-201ENST00000196551 740 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 LCE1A-201ENST00000335123 422 ntAPPRIS P1 BASIC14.51□□□□□ -0.09
COL8A1P27658 DDT-201ENST00000350608 671 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
COL8A1P27658 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC14.51□□□□□ -0.09
COL8A1P27658 TPSD1-202ENST00000397534 896 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
COL8A1P27658 DSCR3-202ENST00000398998 988 ntTSL 5 BASIC14.51□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms