Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 AC005759.1-201ENST00000594805 855 ntTSL 3 BASIC14.17□□□□□ -0.14
USF1P22415 AC099522.2-201ENST00000607001 744 ntBASIC14.17□□□□□ -0.14
USF1P22415 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 AC244517.11-201ENST00000624192 573 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 PHRF1-201ENST00000264555 5523 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 MAP4K1-203ENST00000586296 1363 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 FUS-201ENST00000254108 5119 ntAPPRIS P3 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC14.17□□□□□ -0.14
USF1P22415 TPR-209ENST00000613151 2478 ntTSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC14.17□□□□□ -0.14
USF1P22415 AC026954.2-202ENST00000575474 2571 ntAPPRIS P5 TSL 5 BASIC14.17□□□□□ -0.14
USF1P22415 ODF2-204ENST00000372814 2249 ntTSL 2 BASIC14.17□□□□□ -0.14
USF1P22415 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC14.17□□□□□ -0.14
USF1P22415 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC14.17□□□□□ -0.14
USF1P22415 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 ELOA3-201ENST00000330682 1877 ntAPPRIS P1 BASIC14.16□□□□□ -0.14
USF1P22415 SNX16-201ENST00000345957 1853 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 ARHGEF5-202ENST00000471847 1862 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 ELL-203ENST00000596124 1852 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 OGFR-201ENST00000290291 2410 ntAPPRIS P2 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC14.16□□□□□ -0.14
USF1P22415 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 AC016396.2-201ENST00000562575 1417 ntBASIC14.16□□□□□ -0.14
USF1P22415 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC14.16□□□□□ -0.14
USF1P22415 THNSL2-202ENST00000343544 2052 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 AC063926.3-201ENST00000624734 5658 ntBASIC14.16□□□□□ -0.14
USF1P22415 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 PSMD5-203ENST00000373904 1538 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 SARS2-212ENST00000600042 1630 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 ISM1-201ENST00000262487 2593 ntAPPRIS P1 TSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 MIB2-232ENST00000520777 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 TBP-202ENST00000392092 1903 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 CRTC3-202ENST00000420329 5209 ntAPPRIS ALT1 TSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 KDM6B-202ENST00000448097 5422 ntAPPRIS ALT2 TSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 CENPM-201ENST00000215980 966 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 NDUFA11-201ENST00000308961 539 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 PTMS-202ENST00000389462 773 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 RALGDS-205ENST00000393160 3801 ntAPPRIS ALT2 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 TFAMP1-201ENST00000412727 736 ntBASIC14.16□□□□□ -0.14
USF1P22415 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 CNN2P2-201ENST00000443536 909 ntBASIC14.16□□□□□ -0.14
USF1P22415 CNN2P3-201ENST00000450201 906 ntBASIC14.16□□□□□ -0.14
USF1P22415 LHX6-205ENST00000464484 666 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 GALNT9-208ENST00000541995 1001 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 TSFM-210ENST00000550559 897 ntTSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 FAM177A1-207ENST00000554052 540 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.16□□□□□ -0.14
USF1P22415 GREM1-201ENST00000560677 623 ntTSL 4 BASIC14.16□□□□□ -0.14
USF1P22415 AC093520.2-201ENST00000561830 333 ntBASIC14.16□□□□□ -0.14
USF1P22415 AC015911.4-201ENST00000588022 1070 ntBASIC14.16□□□□□ -0.14
USF1P22415 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 AL136317.3-201ENST00000618497 906 ntBASIC14.16□□□□□ -0.14
USF1P22415 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 AL161645.1-201ENST00000622716 1255 ntBASIC14.16□□□□□ -0.14
USF1P22415 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.16□□□□□ -0.14
USF1P22415 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 HARS-203ENST00000431330 1774 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC14.16□□□□□ -0.14
USF1P22415 ALK-201ENST00000389048 6220 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 TBX6-203ENST00000553607 2162 ntTSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
USF1P22415 AKAP8P1-201ENST00000434743 1349 ntBASIC14.15□□□□□ -0.14
USF1P22415 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC14.15□□□□□ -0.14
USF1P22415 FANCA-203ENST00000389302 1641 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 TRIM17-204ENST00000366698 1748 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 TUBB2B-201ENST00000259818 2020 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC14.15□□□□□ -0.14
USF1P22415 SLC2A6-202ENST00000371899 2528 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 CBSL-202ENST00000617706 2563 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 RPH3AL-222ENST00000618002 2578 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
USF1P22415 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 ZNF264-202ENST00000536056 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 UNC5C-202ENST00000504962 1789 ntTSL 2 BASIC14.15□□□□□ -0.14
USF1P22415 NDUFV1-201ENST00000322776 1596 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 AGPS-201ENST00000264167 7764 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
USF1P22415 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC14.15□□□□□ -0.14
USF1P22415 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC14.15□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms