Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 FAM8A3P-201ENST00000427218 844 ntBASIC16.17■□□□□ 0.18
HOXC4P09017 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC4P09017 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 LINC01336-202ENST00000506086 479 ntTSL 5 BASIC16.17■□□□□ 0.18
HOXC4P09017 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC4P09017 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC4P09017 INO80C-206ENST00000586489 594 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC4P09017 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC4P09017 AC092364.2-202ENST00000597012 1073 ntBASIC16.17■□□□□ 0.18
HOXC4P09017 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC16.17■□□□□ 0.18
HOXC4P09017 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC16.17■□□□□ 0.18
HOXC4P09017 AJ011932.1-201ENST00000621707 465 ntBASIC16.17■□□□□ 0.18
HOXC4P09017 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.18
HOXC4P09017 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
HOXC4P09017 AC005332.8-201ENST00000622750 2735 ntBASIC16.17■□□□□ 0.18
HOXC4P09017 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HOXC4P09017 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC16.16■□□□□ 0.18
HOXC4P09017 AL139300.1-201ENST00000472726 2505 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
HOXC4P09017 FADS3-207ENST00000527697 1640 ntTSL 5 BASIC16.16■□□□□ 0.18
HOXC4P09017 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.16■□□□□ 0.18
HOXC4P09017 TREML5P-201ENST00000421694 576 ntBASIC16.16■□□□□ 0.18
HOXC4P09017 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC16.16■□□□□ 0.18
HOXC4P09017 AL359764.1-201ENST00000444330 504 ntTSL 3 BASIC16.16■□□□□ 0.18
HOXC4P09017 MUSTN1-201ENST00000446157 721 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 AC002310.2-201ENST00000486926 950 ntTSL 2 BASIC16.16■□□□□ 0.18
HOXC4P09017 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC16.16■□□□□ 0.18
HOXC4P09017 RNA5SP410-201ENST00000516285 106 ntBASIC16.16■□□□□ 0.18
HOXC4P09017 AKIP1-211ENST00000534506 576 ntTSL 3 BASIC16.16■□□□□ 0.18
HOXC4P09017 LITAF-210ENST00000571976 548 ntTSL 2 BASIC16.16■□□□□ 0.18
HOXC4P09017 LITAF-214ENST00000574703 486 ntTSL 2 BASIC16.16■□□□□ 0.18
HOXC4P09017 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 GTPBP2-202ENST00000307126 2933 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
HOXC4P09017 SLC25A45-208ENST00000527174 2138 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HOXC4P09017 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC16.16■□□□□ 0.18
HOXC4P09017 PODNL1-202ENST00000339560 2165 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
HOXC4P09017 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
HOXC4P09017 NT5C3A-204ENST00000405342 1759 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC16.15■□□□□ 0.18
HOXC4P09017 PPEF2-207ENST00000621010 1797 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 SHANK1-202ENST00000359082 6459 ntTSL 5 BASIC16.15■□□□□ 0.18
HOXC4P09017 QSOX1-201ENST00000367600 2519 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 FNBP1-202ENST00000420781 5410 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 DEPTOR-203ENST00000523492 1397 ntTSL 2 BASIC16.15■□□□□ 0.18
HOXC4P09017 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC16.15■□□□□ 0.18
HOXC4P09017 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.15■□□□□ 0.18
HOXC4P09017 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC16.15■□□□□ 0.18
HOXC4P09017 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC16.15■□□□□ 0.18
HOXC4P09017 KREMEN1-203ENST00000407188 1422 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 GPR108-202ENST00000430424 2009 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HOXC4P09017 HLA-V-204ENST00000476601 1289 ntBASIC16.15■□□□□ 0.18
HOXC4P09017 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 AC093214.1-201ENST00000511688 1107 ntBASIC16.15■□□□□ 0.18
HOXC4P09017 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.15■□□□□ 0.18
HOXC4P09017 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC16.15■□□□□ 0.18
HOXC4P09017 MZF1-202ENST00000594108 1110 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC16.15■□□□□ 0.18
HOXC4P09017 MFNG-201ENST00000356998 2088 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 DUOXA2-201ENST00000323030 1760 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC16.15■□□□□ 0.18
HOXC4P09017 MGLL-204ENST00000434178 4941 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HOXC4P09017 AC078925.2-201ENST00000624013 1973 ntBASIC16.15■□□□□ 0.18
HOXC4P09017 DNM1-216ENST00000634267 2909 ntTSL 5 BASIC16.15■□□□□ 0.18
HOXC4P09017 DYNC1LI1-204ENST00000432458 1827 ntTSL 2 BASIC16.15■□□□□ 0.18
HOXC4P09017 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.18
HOXC4P09017 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 NOL4L-210ENST00000616976 1376 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 KIAA1522-204ENST00000401073 5438 ntAPPRIS P3 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 VEPH1-218ENST00000494677 1714 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC16.14■□□□□ 0.17
HOXC4P09017 PRRG2-201ENST00000246794 1404 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 ZSWIM5-201ENST00000359600 5819 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 IL27RA-201ENST00000263379 2962 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HOXC4P09017 MRNIP-202ENST00000376931 1004 ntAPPRIS ALT2 TSL 2 BASIC16.14■□□□□ 0.17
HOXC4P09017 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 50.4 ms