Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 NRN1L-201ENST00000339176 710 ntAPPRIS P2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC15.7■□□□□ 0.1
LDB3O75112 PAXX-201ENST00000371620 812 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 RNU1-129P-201ENST00000384064 167 ntBASIC15.7■□□□□ 0.1
LDB3O75112 C11orf74-203ENST00000446510 1062 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LDB3O75112 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 LINC02123-201ENST00000514869 885 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 U1.21-201ENST00000580816 167 ntBASIC15.7■□□□□ 0.1
LDB3O75112 AC068137.2-201ENST00000605408 478 ntBASIC15.7■□□□□ 0.1
LDB3O75112 AL031055.1-201ENST00000606362 631 ntBASIC15.7■□□□□ 0.1
LDB3O75112 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC15.7■□□□□ 0.1
LDB3O75112 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 RTEL1-TNFRSF6B-202ENST00000482936 4931 ntAPPRIS P5 TSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 DDX42-208ENST00000578681 4337 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 KLC1-212ENST00000553286 3135 ntTSL 5 BASIC15.7■□□□□ 0.1
LDB3O75112 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC15.7■□□□□ 0.1
LDB3O75112 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC15.7■□□□□ 0.1
LDB3O75112 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC15.7■□□□□ 0.1
LDB3O75112 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 ADAMTS16-201ENST00000274181 4979 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
LDB3O75112 GALNT9-202ENST00000397325 1727 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 SMCHD1-201ENST00000320876 8821 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC15.69■□□□□ 0.1
LDB3O75112 HMGN4-201ENST00000377575 1225 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC15.69■□□□□ 0.1
LDB3O75112 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.69■□□□□ 0.1
LDB3O75112 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC15.69■□□□□ 0.1
LDB3O75112 USHBP1-203ENST00000431146 2136 ntTSL 2 BASIC15.69■□□□□ 0.1
LDB3O75112 AL391069.2-202ENST00000447795 622 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.69■□□□□ 0.1
LDB3O75112 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC15.69■□□□□ 0.1
LDB3O75112 AC126696.3-201ENST00000563993 575 ntTSL 4 BASIC15.69■□□□□ 0.1
LDB3O75112 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.69■□□□□ 0.1
LDB3O75112 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC15.69■□□□□ 0.1
LDB3O75112 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 FGFR3-208ENST00000481110 4217 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 ABCB10-201ENST00000344517 3857 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 CRYM-AS1-201ENST00000338573 1661 ntTSL 2 BASIC15.69■□□□□ 0.1
LDB3O75112 PCBP3-204ENST00000400309 1986 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 QRICH2-205ENST00000636395 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC15.69■□□□□ 0.1
LDB3O75112 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 PANK4-201ENST00000378466 2677 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 FAM46A-201ENST00000320172 5609 ntAPPRIS P2 TSL 1 (best) BASIC15.69■□□□□ 0.1
LDB3O75112 STARD3NL-204ENST00000434197 1341 ntTSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 HSD17B6-203ENST00000554150 1547 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC15.68■□□□□ 0.1
LDB3O75112 AP004609.1-201ENST00000498872 1646 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 CRY2-211ENST00000616080 1936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 ASL-201ENST00000304874 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 SLC25A23-202ENST00000301454 3425 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 EIF4ENIF1-206ENST00000397525 3695 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 KCTD15-202ENST00000430256 2555 ntAPPRIS P1 TSL 2 BASIC15.68■□□□□ 0.1
LDB3O75112 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 ELMO3-203ENST00000477898 2281 ntAPPRIS ALT2 TSL 2 BASIC15.68■□□□□ 0.1
LDB3O75112 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 ZNF446-201ENST00000335841 1889 ntTSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 CGREF1-201ENST00000260595 1177 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 TYROBP-201ENST00000262629 568 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 C2orf49-202ENST00000410049 854 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 AC140658.5-201ENST00000438532 169 ntBASIC15.68■□□□□ 0.1
LDB3O75112 HLA-J-202ENST00000469281 1241 ntBASIC15.68■□□□□ 0.1
LDB3O75112 GSTK1-207ENST00000479303 1185 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.68■□□□□ 0.1
LDB3O75112 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.68■□□□□ 0.1
LDB3O75112 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC15.68■□□□□ 0.1
LDB3O75112 ZNF786-201ENST00000316286 3144 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 SEMA3B-213ENST00000618865 2925 ntAPPRIS P3 TSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 C2CD3-213ENST00000539061 2722 ntTSL 2 BASIC15.68■□□□□ 0.1
LDB3O75112 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 CD72-204ENST00000396757 2035 ntAPPRIS P2 TSL 5 BASIC15.68■□□□□ 0.1
LDB3O75112 CLEC18C-201ENST00000314151 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 CLEC18A-208ENST00000568461 1934 ntAPPRIS P2 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 GIMAP1-201ENST00000307194 4420 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 FSCN1-201ENST00000382361 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 GLMP-201ENST00000362007 1604 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
LDB3O75112 BHMT2-205ENST00000521567 1537 ntTSL 2 BASIC15.68■□□□□ 0.1
LDB3O75112 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms