Protein–RNA interactions for Protein: A0A539

TCRBV7S3A2, T-cell receptor beta variable 4-2 (Fragment), humanhuman

Predictions only

Length 114 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TCRBV7S3A2A0A539 TSC22D3-203ENST00000372383 2266 ntTSL 2 BASIC16.99■□□□□ 0.31
TCRBV7S3A2A0A539 ITGA8-201ENST00000378076 6755 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TCRBV7S3A2A0A539 AL603832.2-201ENST00000566195 2125 ntBASIC16.99■□□□□ 0.31
TCRBV7S3A2A0A539 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
TCRBV7S3A2A0A539 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 CROCC2-201ENST00000443866 5382 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 LINC02415-201ENST00000508505 1315 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 PSMC3IP-202ENST00000393795 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 GPAA1P2-202ENST00000606848 1787 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 AP4S1-202ENST00000313566 839 ntTSL 3 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 INSL3-201ENST00000317306 755 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 HIST2H3DP1-201ENST00000401004 416 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 LINC01615-202ENST00000449466 603 ntTSL 3 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 METTL23-204ENST00000586752 904 ntTSL 2 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 AC006557.2-201ENST00000592985 1240 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 CLEC4GP1-201ENST00000596555 870 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 REXO1L8P-201ENST00000604378 1897 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 CYTH2-204ENST00000452733 4780 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 ARCN1-203ENST00000392859 1709 ntTSL 2 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 AC105917.1-201ENST00000506637 2539 ntBASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 PCDHA7-202ENST00000525929 5221 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 CLDN14-204ENST00000399137 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 TBC1D1-203ENST00000402522 1567 ntTSL 2 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 FAM208A-209ENST00000493960 5600 ntAPPRIS P2 TSL 5 BASIC16.98■□□□□ 0.31
TCRBV7S3A2A0A539 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 C16orf89-201ENST00000315997 1872 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 ADCY6-202ENST00000357869 5748 ntTSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 AL512625.3-203ENST00000445604 1602 ntTSL 5 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 SASH3-201ENST00000356892 2626 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 AC006449.6-201ENST00000612330 2296 ntBASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 CYCS-202ENST00000409409 974 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 BX276092.7-202ENST00000422194 696 ntTSL 3 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 AC068389.2-201ENST00000529518 430 ntTSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 DUSP6-204ENST00000547291 1074 ntTSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 AC018529.2-201ENST00000612024 828 ntTSL 4 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 TP73-AS1-207ENST00000624167 988 ntBASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 LINC00554-201ENST00000564841 3011 ntBASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 COPS8-202ENST00000392008 1654 ntTSL 2 BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 TLE6-202ENST00000452088 1883 ntAPPRIS P3 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
TCRBV7S3A2A0A539 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 DENND1A-202ENST00000373620 3612 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 SEMA4B-202ENST00000411539 3807 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 AKT1-214ENST00000555528 3066 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 SYBU-231ENST00000533065 2645 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 BRI3BP-201ENST00000341446 6648 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 POMC-203ENST00000395826 959 ntAPPRIS P1 TSL 2 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 HNRNPDP1-201ENST00000439535 754 ntBASIC16.96■□□□□ 0.31
TCRBV7S3A2A0A539 TTLL12-204ENST00000494035 888 ntTSL 2 BASIC16.96■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms