Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
VSX1Q9NZR4 LINC01342-201ENST00000416774 1620 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
VSX1Q9NZR4 RGS19-201ENST00000332298 1510 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VSX1Q9NZR4 AC138932.3-201ENST00000567634 1902 ntBASIC21.26■□□□□ 0.99
VSX1Q9NZR4 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
VSX1Q9NZR4 RP9P-202ENST00000450133 1212 ntBASIC21.26■□□□□ 0.99
VSX1Q9NZR4 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.26■□□□□ 0.99
VSX1Q9NZR4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 AL357033.1-201ENST00000370520 1933 ntTSL 2 BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 PYCR1-202ENST00000337943 1890 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 MAZ-203ENST00000545521 2333 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
VSX1Q9NZR4 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VSX1Q9NZR4 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
VSX1Q9NZR4 MAGI2-217ENST00000629359 6704 ntTSL 5 BASIC21.24■□□□□ 0.99
VSX1Q9NZR4 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 HSBP1L1-201ENST00000451882 771 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 CLDND1-226ENST00000513287 999 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 MBP-237ENST00000579129 1052 ntTSL 5 BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 PRDM13-202ENST00000369215 2429 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
VSX1Q9NZR4 FBXL6-202ENST00000455319 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 HES4-202ENST00000428771 1040 ntTSL 2 BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 AC093536.1-201ENST00000569153 554 ntBASIC21.22■□□□□ 0.99
VSX1Q9NZR4 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 AC007029.1-201ENST00000604183 313 ntBASIC21.22■□□□□ 0.99
VSX1Q9NZR4 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
VSX1Q9NZR4 C4orf19-202ENST00000381980 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 WDR38-203ENST00000618744 1270 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
VSX1Q9NZR4 FOXO6-202ENST00000641094 1476 ntAPPRIS P1 BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 MBLAC1-201ENST00000398075 1502 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 SLC6A10P-202ENST00000431994 2058 ntBASIC21.2■□□□□ 0.98
VSX1Q9NZR4 MAP3K3-210ENST00000584573 2480 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
VSX1Q9NZR4 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 GPX1-201ENST00000419349 1106 ntBASIC21.19■□□□□ 0.98
VSX1Q9NZR4 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 PAPOLA-225ENST00000557471 1421 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
VSX1Q9NZR4 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 GFER-205ENST00000569451 517 ntTSL 5 BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 R3HDM4-208ENST00000626716 138 ntTSL 5 BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 NFKBIE-201ENST00000275015 2581 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
VSX1Q9NZR4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 AC093323.1-202ENST00000635031 2045 ntBASIC21.17■□□□□ 0.98
VSX1Q9NZR4 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 MAP3K8-203ENST00000375322 932 ntTSL 2 BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 SYT7-202ENST00000535826 1621 ntTSL 5 BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
VSX1Q9NZR4 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 RRAS2-201ENST00000256196 1516 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 RAP2CP1-202ENST00000605179 643 ntBASIC21.16■□□□□ 0.98
VSX1Q9NZR4 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
VSX1Q9NZR4 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
VSX1Q9NZR4 RNASET2-210ENST00000508775 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 47.7 ms