Protein–RNA interactions for Protein: Q96NZ1

FOXN4, Forkhead box protein N4, humanhuman

Predictions only

Length 517 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN4Q96NZ1 ANKRD20A11P-201ENST00000344693 1088 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN4Q96NZ1 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
FOXN4Q96NZ1 HMGA2-201ENST00000354636 1529 ntTSL 1 (best) BASIC21.29■■□□□ 1
FOXN4Q96NZ1 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
FOXN4Q96NZ1 PFN2-211ENST00000489155 636 ntTSL 4 BASIC21.28■■□□□ 1
FOXN4Q96NZ1 ECEL1-202ENST00000409941 2322 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN4Q96NZ1 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC21.27■■□□□ 1
FOXN4Q96NZ1 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC21.27■■□□□ 1
FOXN4Q96NZ1 NTF6A-201ENST00000591175 560 ntBASIC21.27■■□□□ 1
FOXN4Q96NZ1 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN4Q96NZ1 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.27■■□□□ 1
FOXN4Q96NZ1 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
FOXN4Q96NZ1 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC21.27■□□□□ 0.99
FOXN4Q96NZ1 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
FOXN4Q96NZ1 PLEKHA8-201ENST00000258679 2293 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 EPM2A-209ENST00000638262 2679 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 AC022211.4-201ENST00000625094 2161 ntBASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 TNFRSF4-201ENST00000379236 1068 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
FOXN4Q96NZ1 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 FKBP8-213ENST00000608443 1849 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 MIR3960-201ENST00000583311 91 ntBASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 SNX21-204ENST00000372542 1824 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
FOXN4Q96NZ1 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 MED17-227ENST00000640521 2047 ntTSL 5 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 MROH6-210ENST00000533679 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 ECEL1P2-201ENST00000461596 1295 ntBASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 PMS1-205ENST00000409985 1882 ntTSL 2 BASIC21.24■□□□□ 0.99
FOXN4Q96NZ1 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 PKIG-205ENST00000372891 1443 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 AC138932.3-201ENST00000567634 1902 ntBASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 PVT1-212ENST00000521951 1535 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 ARHGDIA-203ENST00000541078 1517 ntAPPRIS P1 TSL 3 BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
FOXN4Q96NZ1 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 COQ2-201ENST00000311461 1464 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 RING1-201ENST00000374656 1752 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 REST-210ENST00000638187 1334 ntTSL 5 BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 CCDC71L-201ENST00000315965 1575 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.22■□□□□ 0.99
FOXN4Q96NZ1 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN4Q96NZ1 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
FOXN4Q96NZ1 SLCO3A1-201ENST00000318445 5115 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN4Q96NZ1 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.98
FOXN4Q96NZ1 AC093536.1-201ENST00000569153 554 ntBASIC21.2■□□□□ 0.98
FOXN4Q96NZ1 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.2■□□□□ 0.98
FOXN4Q96NZ1 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 PTPMT1-205ENST00000534775 1611 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 AC012354.3-201ENST00000623734 483 ntBASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC21.19■□□□□ 0.98
FOXN4Q96NZ1 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 AC142381.3-201ENST00000568208 1670 ntBASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 AC097639.1-201ENST00000565519 1891 ntBASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 NRG1-210ENST00000520407 1955 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 AL590677.1-201ENST00000438431 380 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 FGF13-AS1-202ENST00000446383 584 ntTSL 3 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 RP9P-202ENST00000450133 1212 ntBASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 USP25-203ENST00000351097 2158 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 HYI-213ENST00000583037 1322 ntTSL 5 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
FOXN4Q96NZ1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 11.4 ms