Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC58Q4VC31 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.18■□□□□ 0.98
CCDC58Q4VC31 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC21.18■□□□□ 0.98
CCDC58Q4VC31 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCDC58Q4VC31 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC21.18■□□□□ 0.98
CCDC58Q4VC31 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC58Q4VC31 AC148477.6-201ENST00000623746 465 ntBASIC21.17■□□□□ 0.98
CCDC58Q4VC31 FAM181A-204ENST00000557000 1652 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC58Q4VC31 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.17■□□□□ 0.98
CCDC58Q4VC31 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
CCDC58Q4VC31 RYK-208ENST00000620660 2942 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC58Q4VC31 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCDC58Q4VC31 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 MIR219A2-201ENST00000608502 1504 ntBASIC21.16■□□□□ 0.98
CCDC58Q4VC31 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCDC58Q4VC31 SLC22A31-206ENST00000614943 1860 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC58Q4VC31 EED-207ENST00000528180 1745 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC58Q4VC31 AP003733.4-201ENST00000623785 1697 ntBASIC21.15■□□□□ 0.98
CCDC58Q4VC31 LY6K-201ENST00000292430 2671 ntAPPRIS P3 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC58Q4VC31 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC21.15■□□□□ 0.98
CCDC58Q4VC31 MYCL-201ENST00000372815 1944 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC58Q4VC31 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCDC58Q4VC31 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC58Q4VC31 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCDC58Q4VC31 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC58Q4VC31 LINC01971-201ENST00000617888 1048 ntBASIC21.14■□□□□ 0.97
CCDC58Q4VC31 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.14■□□□□ 0.97
CCDC58Q4VC31 NFKBIB-204ENST00000572515 1929 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCDC58Q4VC31 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCDC58Q4VC31 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 ADIPOR1-201ENST00000340990 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 AC104109.3-201ENST00000519718 483 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCDC58Q4VC31 AL359504.2-201ENST00000605506 1601 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC21.11■□□□□ 0.97
CCDC58Q4VC31 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L13-201ENST00000554103 1267 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L15-201ENST00000611059 1267 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L23-201ENST00000615195 1269 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L24-201ENST00000617576 1269 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L22-201ENST00000618238 1269 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L20-201ENST00000619712 1269 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L21-201ENST00000622058 1269 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L10-201ENST00000622460 1267 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 DUX4L25-201ENST00000624915 1269 ntBASIC21.11■□□□□ 0.97
CCDC58Q4VC31 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCDC58Q4VC31 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
CCDC58Q4VC31 SUGCT-209ENST00000628514 1591 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 LAT-201ENST00000354453 1713 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCDC58Q4VC31 AL359258.2-201ENST00000564063 1566 ntBASIC21.1■□□□□ 0.97
CCDC58Q4VC31 PPP2R2D-201ENST00000455566 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCDC58Q4VC31 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC58Q4VC31 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC58Q4VC31 SCARA5-204ENST00000524352 1945 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC58Q4VC31 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCDC58Q4VC31 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.08■□□□□ 0.97
CCDC58Q4VC31 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC58Q4VC31 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC58Q4VC31 PLEKHA8-202ENST00000396257 1907 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
CCDC58Q4VC31 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 RITA1-203ENST00000552495 1898 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 GJC1-209ENST00000592524 1837 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 AC097639.1-201ENST00000565519 1891 ntBASIC21.07■□□□□ 0.96
CCDC58Q4VC31 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC58Q4VC31 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC58Q4VC31 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 168.8 ms