Protein–RNA interactions for Protein: P62857

RPS28, 40S ribosomal protein S28, humanhuman

Known RBP Predictions only

Length 69 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28P62857 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC14.13□□□□□ -0.15
RPS28P62857 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
RPS28P62857 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
RPS28P62857 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 TBXA2R-201ENST00000375190 2608 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC14.12□□□□□ -0.15
RPS28P62857 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 LHX3-201ENST00000371746 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
RPS28P62857 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
RPS28P62857 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
RPS28P62857 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPS28P62857 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC14.11□□□□□ -0.15
RPS28P62857 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC14.11□□□□□ -0.15
RPS28P62857 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPS28P62857 AC142381.3-201ENST00000568208 1670 ntBASIC14.11□□□□□ -0.15
RPS28P62857 TIGD5-201ENST00000504548 5390 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
RPS28P62857 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.15
RPS28P62857 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPS28P62857 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
RPS28P62857 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 DENND4B-201ENST00000361217 5706 ntAPPRIS P2 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC14.1□□□□□ -0.15
RPS28P62857 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC14.1□□□□□ -0.15
RPS28P62857 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC14.1□□□□□ -0.15
RPS28P62857 ADORA2A-AS1-203ENST00000427813 2027 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC14.1□□□□□ -0.15
RPS28P62857 ME2-208ENST00000638937 2471 ntTSL 5 BASIC14.09□□□□□ -0.15
RPS28P62857 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPS28P62857 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC14.09□□□□□ -0.15
RPS28P62857 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC14.09□□□□□ -0.15
RPS28P62857 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC14.09□□□□□ -0.15
RPS28P62857 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC14.09□□□□□ -0.15
RPS28P62857 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPS28P62857 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC14.09□□□□□ -0.15
RPS28P62857 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPS28P62857 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.09□□□□□ -0.15
RPS28P62857 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC14.08□□□□□ -0.15
RPS28P62857 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC14.08□□□□□ -0.16
RPS28P62857 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC14.08□□□□□ -0.16
RPS28P62857 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPS28P62857 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC14.08□□□□□ -0.16
RPS28P62857 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPS28P62857 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPS28P62857 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC14.08□□□□□ -0.16
RPS28P62857 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC14.08□□□□□ -0.16
RPS28P62857 FOXL2-201ENST00000330315 2917 ntAPPRIS P1 BASIC14.08□□□□□ -0.16
RPS28P62857 MAPK9-208ENST00000455781 4336 ntAPPRIS ALT1 TSL 2 BASIC14.07□□□□□ -0.16
RPS28P62857 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC14.07□□□□□ -0.16
RPS28P62857 AC127496.7-201ENST00000625110 1798 ntBASIC14.07□□□□□ -0.16
RPS28P62857 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPS28P62857 STRN4-202ENST00000391910 3628 ntAPPRIS ALT1 TSL 5 BASIC14.07□□□□□ -0.16
RPS28P62857 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPS28P62857 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
RPS28P62857 ROR1-201ENST00000371079 5832 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
RPS28P62857 CDH23-208ENST00000461841 2000 ntTSL 5 BASIC14.07□□□□□ -0.16
RPS28P62857 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC14.06□□□□□ -0.16
RPS28P62857 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 AC097639.1-201ENST00000565519 1891 ntBASIC14.06□□□□□ -0.16
RPS28P62857 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC14.06□□□□□ -0.16
RPS28P62857 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC14.06□□□□□ -0.16
RPS28P62857 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 WHAMMP2-203ENST00000563942 1603 ntBASIC14.06□□□□□ -0.16
RPS28P62857 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC14.06□□□□□ -0.16
RPS28P62857 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC14.06□□□□□ -0.16
RPS28P62857 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC14.06□□□□□ -0.16
RPS28P62857 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 COL4A3BP-201ENST00000261415 2262 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
RPS28P62857 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 S1PR4-201ENST00000246115 1565 ntAPPRIS P1 BASIC14.05□□□□□ -0.16
RPS28P62857 XKR6-203ENST00000416569 3382 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 NKX2-1-201ENST00000354822 2191 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC14.05□□□□□ -0.16
RPS28P62857 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RPS28P62857 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
RPS28P62857 PTPA-223ENST00000452489 2526 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
RPS28P62857 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
RPS28P62857 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPS28P62857 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
RPS28P62857 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
RPS28P62857 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 80.7 ms