Protein–RNA interactions for Protein: P56589

PEX3, Peroxisomal biogenesis factor 3, humanhuman

Predictions only

Length 373 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PEX3P56589 RCCD1-203ENST00000555155 1871 ntAPPRIS ALT1 TSL 5 BASIC26.42■■□□□ 1.82
PEX3P56589 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PEX3P56589 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC26.42■■□□□ 1.82
PEX3P56589 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PEX3P56589 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
PEX3P56589 BHLHE23-202ENST00000612929 1109 ntBASIC26.42■■□□□ 1.82
PEX3P56589 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
PEX3P56589 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC26.42■■□□□ 1.82
PEX3P56589 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC26.42■■□□□ 1.82
PEX3P56589 PNCK-204ENST00000370150 1612 ntAPPRIS P1 TSL 5 BASIC26.42■■□□□ 1.82
PEX3P56589 ZNF263-204ENST00000573578 1636 ntTSL 5 BASIC26.42■■□□□ 1.82
PEX3P56589 IL15RA-214ENST00000525219 1850 ntAPPRIS ALT2 TSL 1 (best) BASIC26.41■■□□□ 1.82
PEX3P56589 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC26.41■■□□□ 1.82
PEX3P56589 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC26.41■■□□□ 1.82
PEX3P56589 KRT18P10-201ENST00000388836 1287 ntBASIC26.41■■□□□ 1.82
PEX3P56589 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC26.41■■□□□ 1.82
PEX3P56589 HYI-210ENST00000486909 905 ntTSL 5 BASIC26.41■■□□□ 1.82
PEX3P56589 AC139795.1-202ENST00000500444 432 ntBASIC26.41■■□□□ 1.82
PEX3P56589 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC26.41■■□□□ 1.82
PEX3P56589 ACOT1-202ENST00000557556 1271 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
PEX3P56589 AC087393.1-201ENST00000582896 145 ntBASIC26.41■■□□□ 1.82
PEX3P56589 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC26.41■■□□□ 1.82
PEX3P56589 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC26.4■■□□□ 1.82
PEX3P56589 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC26.4■■□□□ 1.82
PEX3P56589 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC26.4■■□□□ 1.82
PEX3P56589 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
PEX3P56589 CREM-210ENST00000374721 2020 ntTSL 5 BASIC26.39■■□□□ 1.81
PEX3P56589 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PEX3P56589 MAPKAP1-207ENST00000394060 1586 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PEX3P56589 HERC2P9-201ENST00000507787 1023 ntTSL 1 (best) BASIC26.38■■□□□ 1.81
PEX3P56589 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PEX3P56589 TST-202ENST00000403892 1797 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PEX3P56589 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC26.38■■□□□ 1.81
PEX3P56589 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC26.37■■□□□ 1.81
PEX3P56589 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC26.37■■□□□ 1.81
PEX3P56589 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC26.37■■□□□ 1.81
PEX3P56589 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PEX3P56589 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.37■■□□□ 1.81
PEX3P56589 RHOF-203ENST00000537171 1485 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PEX3P56589 SLC16A11-202ENST00000447225 1779 ntAPPRIS ALT2 TSL 5 BASIC26.36■■□□□ 1.81
PEX3P56589 AC010980.1-201ENST00000587192 1142 ntBASIC26.36■■□□□ 1.81
PEX3P56589 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PEX3P56589 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC26.36■■□□□ 1.81
PEX3P56589 PDPK1-204ENST00000441549 1729 ntTSL 1 (best) BASIC26.36■■□□□ 1.81
PEX3P56589 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.36■■□□□ 1.81
PEX3P56589 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PEX3P56589 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC26.35■■□□□ 1.81
PEX3P56589 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC26.35■■□□□ 1.81
PEX3P56589 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.35■■□□□ 1.81
PEX3P56589 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
PEX3P56589 CCNJL-201ENST00000257536 1848 ntAPPRIS P1 TSL 2 BASIC26.35■■□□□ 1.81
PEX3P56589 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC26.34■■□□□ 1.81
PEX3P56589 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PEX3P56589 FGF22-202ENST00000586042 1288 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PEX3P56589 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC26.34■■□□□ 1.81
PEX3P56589 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC26.34■■□□□ 1.81
PEX3P56589 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC26.34■■□□□ 1.81
PEX3P56589 CFAP99-207ENST00000635017 2298 ntTSL 5 BASIC26.34■■□□□ 1.81
PEX3P56589 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC26.33■■□□□ 1.81
PEX3P56589 CHST13-201ENST00000319340 1789 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PEX3P56589 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
PEX3P56589 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC26.33■■□□□ 1.81
PEX3P56589 RINL-202ENST00000591812 1910 ntAPPRIS ALT2 TSL 2 BASIC26.33■■□□□ 1.81
PEX3P56589 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PEX3P56589 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC26.32■■□□□ 1.8
PEX3P56589 REEP6-201ENST00000233596 1794 ntAPPRIS P2 TSL 1 (best) BASIC26.32■■□□□ 1.8
PEX3P56589 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.32■■□□□ 1.8
PEX3P56589 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
PEX3P56589 ANKS3-204ENST00000585773 1946 ntTSL 2 BASIC26.31■■□□□ 1.8
PEX3P56589 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PEX3P56589 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PEX3P56589 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC26.31■■□□□ 1.8
PEX3P56589 PVT1_1.1-201ENST00000615125 194 ntBASIC26.31■■□□□ 1.8
PEX3P56589 AC074183.2-201ENST00000623112 922 ntBASIC26.31■■□□□ 1.8
PEX3P56589 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC26.31■■□□□ 1.8
PEX3P56589 AC097639.1-201ENST00000565519 1891 ntBASIC26.31■■□□□ 1.8
PEX3P56589 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC26.31■■□□□ 1.8
PEX3P56589 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PEX3P56589 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PEX3P56589 BEX3-202ENST00000372634 753 ntTSL 2 BASIC26.3■■□□□ 1.8
PEX3P56589 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC26.3■■□□□ 1.8
PEX3P56589 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
PEX3P56589 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC26.3■■□□□ 1.8
PEX3P56589 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC26.3■■□□□ 1.8
PEX3P56589 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC26.29■■□□□ 1.8
PEX3P56589 LONRF2P2-201ENST00000439212 571 ntBASIC26.29■■□□□ 1.8
PEX3P56589 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC26.29■■□□□ 1.8
PEX3P56589 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC26.29■■□□□ 1.8
PEX3P56589 JMJD8-201ENST00000412368 2038 ntAPPRIS P2 TSL 1 (best) BASIC26.29■■□□□ 1.8
PEX3P56589 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
PEX3P56589 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
PEX3P56589 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC26.28■■□□□ 1.8
PEX3P56589 OXLD1-203ENST00000571503 803 ntTSL 2 BASIC26.28■■□□□ 1.8
PEX3P56589 SPTSSA-201ENST00000298130 2777 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PEX3P56589 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
PEX3P56589 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PEX3P56589 PLEK2-201ENST00000216446 1549 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PEX3P56589 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC26.27■■□□□ 1.8
PEX3P56589 CLPTM1L-201ENST00000320895 2500 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
PEX3P56589 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 77 ms