Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 TNFSF12-TNFSF13-201ENST00000293826 1816 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
NKX2-1P43699 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC19.44■□□□□ 0.7
NKX2-1P43699 DAZAP1-205ENST00000587079 2086 ntAPPRIS ALT1 TSL 5 BASIC19.44■□□□□ 0.7
NKX2-1P43699 ZFYVE28-202ENST00000503000 1874 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 E2F5-202ENST00000416274 1728 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
NKX2-1P43699 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC19.43■□□□□ 0.7
NKX2-1P43699 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
NKX2-1P43699 ANKRD16-202ENST00000380092 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
NKX2-1P43699 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-1P43699 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-1P43699 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-1P43699 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-1P43699 EPCAM-201ENST00000263735 1724 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
NKX2-1P43699 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC19.42■□□□□ 0.7
NKX2-1P43699 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
NKX2-1P43699 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC19.41■□□□□ 0.7
NKX2-1P43699 RDH14-201ENST00000381249 1587 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 AC068473.5-201ENST00000616428 2072 ntBASIC19.41■□□□□ 0.7
NKX2-1P43699 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC19.41■□□□□ 0.7
NKX2-1P43699 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
NKX2-1P43699 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
NKX2-1P43699 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-1P43699 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-1P43699 AKT1S1-201ENST00000344175 1760 ntAPPRIS P1 TSL 3 BASIC19.4■□□□□ 0.7
NKX2-1P43699 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
NKX2-1P43699 LINC00543-201ENST00000567234 1845 ntBASIC19.4■□□□□ 0.7
NKX2-1P43699 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC19.4■□□□□ 0.7
NKX2-1P43699 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-1P43699 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
NKX2-1P43699 IFNL4-201ENST00000606380 1637 ntAPPRIS P5 TSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-1P43699 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
NKX2-1P43699 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX2-1P43699 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC19.39■□□□□ 0.7
NKX2-1P43699 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
NKX2-1P43699 ZFP90-204ENST00000564323 560 ntTSL 4 BASIC19.39■□□□□ 0.69
NKX2-1P43699 ZFP90-219ENST00000611381 695 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-1P43699 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-1P43699 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-1P43699 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
NKX2-1P43699 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
NKX2-1P43699 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX2-1P43699 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NKX2-1P43699 USP2-204ENST00000525735 1704 ntAPPRIS ALT1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX2-1P43699 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC19.38■□□□□ 0.69
NKX2-1P43699 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
NKX2-1P43699 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
NKX2-1P43699 SYNGR3-201ENST00000248121 2051 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX2-1P43699 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NKX2-1P43699 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX2-1P43699 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC19.37■□□□□ 0.69
NKX2-1P43699 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC19.37■□□□□ 0.69
NKX2-1P43699 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
NKX2-1P43699 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
NKX2-1P43699 IQANK1-201ENST00000527139 1803 ntAPPRIS P1 TSL 5 BASIC19.37■□□□□ 0.69
NKX2-1P43699 CRACR2B-201ENST00000450448 1663 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-1P43699 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-1P43699 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-1P43699 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
NKX2-1P43699 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC19.36■□□□□ 0.69
NKX2-1P43699 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC19.36■□□□□ 0.69
NKX2-1P43699 AC141586.4-201ENST00000624558 1573 ntBASIC19.36■□□□□ 0.69
NKX2-1P43699 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC19.35■□□□□ 0.69
NKX2-1P43699 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 TMEM203-201ENST00000343666 1557 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
NKX2-1P43699 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
NKX2-1P43699 PQLC3-201ENST00000295083 1830 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-1P43699 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC19.34■□□□□ 0.69
NKX2-1P43699 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
NKX2-1P43699 KCNQ5-205ENST00000370398 6345 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
NKX2-1P43699 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC19.33■□□□□ 0.69
NKX2-1P43699 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.33■□□□□ 0.69
NKX2-1P43699 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
NKX2-1P43699 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NKX2-1P43699 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
NKX2-1P43699 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
NKX2-1P43699 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
NKX2-1P43699 SLC6A10P-202ENST00000431994 2058 ntBASIC19.32■□□□□ 0.68
NKX2-1P43699 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.32■□□□□ 0.68
NKX2-1P43699 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.32■□□□□ 0.68
NKX2-1P43699 HSPBP1-201ENST00000255631 1768 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 13.5 ms