Protein–RNA interactions for Protein: P30408

TM4SF1, Transmembrane 4 L6 family member 1, humanhuman

Predictions only

Length 202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM4SF1P30408 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
TM4SF1P30408 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC30.31■■■□□ 2.44
TM4SF1P30408 AC110285.6-201ENST00000617652 491 ntBASIC30.31■■■□□ 2.44
TM4SF1P30408 AL117332.1-201ENST00000622628 974 ntBASIC30.31■■■□□ 2.44
TM4SF1P30408 TSGA13-204ENST00000456951 2046 ntAPPRIS P2 TSL 2 BASIC30.3■■■□□ 2.44
TM4SF1P30408 CTF1-201ENST00000279804 1664 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 COMMD7-201ENST00000278980 1900 ntAPPRIS P3 TSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 RABL6-204ENST00000371671 1580 ntAPPRIS ALT2 TSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC30.3■■■□□ 2.44
TM4SF1P30408 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC30.3■■■□□ 2.44
TM4SF1P30408 MIR3621-201ENST00000580529 85 ntBASIC30.3■■■□□ 2.44
TM4SF1P30408 MIR4281-201ENST00000580852 62 ntBASIC30.3■■■□□ 2.44
TM4SF1P30408 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC30.3■■■□□ 2.44
TM4SF1P30408 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 ST7L-206ENST00000369666 1815 ntTSL 1 (best) BASIC30.3■■■□□ 2.44
TM4SF1P30408 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC30.29■■■□□ 2.44
TM4SF1P30408 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC30.29■■■□□ 2.44
TM4SF1P30408 CENPVL1-201ENST00000602548 1620 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
TM4SF1P30408 CENPVL2-201ENST00000634648 1620 ntAPPRIS P1 BASIC30.29■■■□□ 2.44
TM4SF1P30408 UBALD2-201ENST00000327490 1593 ntAPPRIS P1 TSL 1 (best) BASIC30.28■■■□□ 2.44
TM4SF1P30408 FBRSL1-201ENST00000434748 5568 ntAPPRIS P2 TSL 1 (best) BASIC30.28■■■□□ 2.44
TM4SF1P30408 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC30.28■■■□□ 2.44
TM4SF1P30408 DRD5P2-201ENST00000421395 2012 ntBASIC30.28■■■□□ 2.44
TM4SF1P30408 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC30.27■■■□□ 2.44
TM4SF1P30408 AL022341.2-201ENST00000573609 1417 ntTSL 3 BASIC30.27■■■□□ 2.44
TM4SF1P30408 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC30.27■■■□□ 2.44
TM4SF1P30408 CD6-206ENST00000452451 1782 ntAPPRIS ALT2 TSL 1 (best) BASIC30.26■■■□□ 2.44
TM4SF1P30408 SH3BP2-221ENST00000511747 2351 ntAPPRIS P3 TSL 1 (best) BASIC30.26■■■□□ 2.43
TM4SF1P30408 ABHD17C-202ENST00000558464 1976 ntTSL 1 (best) BASIC30.26■■■□□ 2.43
TM4SF1P30408 SHARPIN-202ENST00000398712 1765 ntAPPRIS P1 TSL 1 (best) BASIC30.26■■■□□ 2.43
TM4SF1P30408 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC30.25■■■□□ 2.43
TM4SF1P30408 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC30.25■■■□□ 2.43
TM4SF1P30408 HOMER2-202ENST00000450735 1950 ntAPPRIS ALT2 TSL 1 (best) BASIC30.25■■■□□ 2.43
TM4SF1P30408 AC010997.5-201ENST00000609182 354 ntBASIC30.25■■■□□ 2.43
TM4SF1P30408 AC005837.3-201ENST00000612163 286 ntBASIC30.25■■■□□ 2.43
TM4SF1P30408 BX255925.1-201ENST00000566954 1854 ntBASIC30.25■■■□□ 2.43
TM4SF1P30408 SLC35A2-207ENST00000445167 1739 ntTSL 1 (best) BASIC30.25■■■□□ 2.43
TM4SF1P30408 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
TM4SF1P30408 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC30.24■■■□□ 2.43
TM4SF1P30408 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
TM4SF1P30408 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC30.24■■■□□ 2.43
TM4SF1P30408 HMX2-201ENST00000339992 1628 ntAPPRIS P1 TSL 1 (best) BASIC30.24■■■□□ 2.43
TM4SF1P30408 CTF1-202ENST00000395019 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC30.24■■■□□ 2.43
TM4SF1P30408 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC30.23■■■□□ 2.43
TM4SF1P30408 MIR6724-1-201ENST00000616420 92 ntBASIC30.23■■■□□ 2.43
TM4SF1P30408 MIR6724-2-201ENST00000616483 92 ntBASIC30.23■■■□□ 2.43
TM4SF1P30408 MIR6724-4-201ENST00000617390 92 ntBASIC30.23■■■□□ 2.43
TM4SF1P30408 MIR6724-3-201ENST00000622482 92 ntBASIC30.23■■■□□ 2.43
TM4SF1P30408 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC30.23■■■□□ 2.43
TM4SF1P30408 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC30.23■■■□□ 2.43
TM4SF1P30408 LRFN4-202ENST00000393952 1550 ntTSL 5 BASIC30.23■■■□□ 2.43
TM4SF1P30408 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC30.23■■■□□ 2.43
TM4SF1P30408 CDK2AP1-201ENST00000261692 1625 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TM4SF1P30408 LSM4-201ENST00000252816 986 ntTSL 2 BASIC30.22■■■□□ 2.43
TM4SF1P30408 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC30.22■■■□□ 2.43
TM4SF1P30408 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC30.22■■■□□ 2.43
TM4SF1P30408 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TM4SF1P30408 MIR4466-201ENST00000606121 54 ntBASIC30.22■■■□□ 2.43
TM4SF1P30408 VSTM2L-202ENST00000373461 1959 ntAPPRIS P1 TSL 1 (best) BASIC30.22■■■□□ 2.43
TM4SF1P30408 FBXO7-206ENST00000452138 1535 ntTSL 2 BASIC30.22■■■□□ 2.43
TM4SF1P30408 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.21■■■□□ 2.43
TM4SF1P30408 HOMER3-201ENST00000221222 1384 ntAPPRIS ALT1 TSL 5 BASIC30.21■■■□□ 2.43
TM4SF1P30408 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC30.21■■■□□ 2.43
TM4SF1P30408 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC30.21■■■□□ 2.43
TM4SF1P30408 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC30.21■■■□□ 2.43
TM4SF1P30408 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC30.2■■■□□ 2.43
TM4SF1P30408 HES4-201ENST00000304952 899 ntAPPRIS P1 TSL 1 (best) BASIC30.2■■■□□ 2.43
TM4SF1P30408 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC30.2■■■□□ 2.43
TM4SF1P30408 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC30.2■■■□□ 2.43
TM4SF1P30408 SENP5-202ENST00000419026 973 ntTSL 3 BASIC30.2■■■□□ 2.43
TM4SF1P30408 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC30.2■■■□□ 2.43
TM4SF1P30408 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC30.2■■■□□ 2.43
TM4SF1P30408 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC30.2■■■□□ 2.43
TM4SF1P30408 C11orf80-218ENST00000540737 1786 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.42
TM4SF1P30408 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC30.2■■■□□ 2.42
TM4SF1P30408 DGAT1-201ENST00000332324 1473 ntTSL 5 BASIC30.19■■■□□ 2.42
TM4SF1P30408 RNF175-201ENST00000347063 1604 ntAPPRIS P1 TSL 1 (best) BASIC30.19■■■□□ 2.42
TM4SF1P30408 AC139426.1-201ENST00000568218 2529 ntBASIC30.19■■■□□ 2.42
TM4SF1P30408 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC30.19■■■□□ 2.42
TM4SF1P30408 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TM4SF1P30408 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TM4SF1P30408 TAZ-216ENST00000613002 1485 ntTSL 1 (best) BASIC30.19■■■□□ 2.42
TM4SF1P30408 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC30.18■■■□□ 2.42
TM4SF1P30408 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC30.18■■■□□ 2.42
TM4SF1P30408 EPM2A-208ENST00000618445 1694 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
TM4SF1P30408 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC30.17■■■□□ 2.42
TM4SF1P30408 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC30.17■■■□□ 2.42
TM4SF1P30408 AC096631.2-201ENST00000436136 790 ntBASIC30.17■■■□□ 2.42
TM4SF1P30408 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC30.17■■■□□ 2.42
TM4SF1P30408 CBX4-201ENST00000269397 2664 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
TM4SF1P30408 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC30.16■■■□□ 2.42
TM4SF1P30408 SLC39A3-201ENST00000269740 1502 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
TM4SF1P30408 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC30.15■■■□□ 2.42
TM4SF1P30408 QDPR-206ENST00000508623 601 ntTSL 3 BASIC30.14■■■□□ 2.42
TM4SF1P30408 AC133561.4-201ENST00000566112 224 ntBASIC30.14■■■□□ 2.42
TM4SF1P30408 AL356740.2-201ENST00000601559 647 ntBASIC30.14■■■□□ 2.42
TM4SF1P30408 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms