Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
LIMS3P0CW19 ACTR1B-201ENST00000289228 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
LIMS3P0CW19 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 SLC35B2-204ENST00000537814 1715 ntTSL 2 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 AC008813.1-201ENST00000536597 885 ntBASIC21.22■□□□□ 0.99
LIMS3P0CW19 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 KIF13A-207ENST00000502704 1330 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
LIMS3P0CW19 RUNX1-205ENST00000399240 1590 ntTSL 3 BASIC21.22■□□□□ 0.99
LIMS3P0CW19 RSPH1-201ENST00000291536 1430 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 ZNF641-205ENST00000547026 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
LIMS3P0CW19 AC068473.5-201ENST00000616428 2072 ntBASIC21.2■□□□□ 0.99
LIMS3P0CW19 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC21.2■□□□□ 0.99
LIMS3P0CW19 CDC34-201ENST00000215574 1471 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PCYT2-204ENST00000570388 1474 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PKMYT1-211ENST00000573944 1891 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 SCN1B-201ENST00000262631 1670 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
LIMS3P0CW19 SLC52A2-208ENST00000527078 1790 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
LIMS3P0CW19 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 IRF2BP1-201ENST00000302165 2564 ntAPPRIS P1 BASIC21.19■□□□□ 0.98
LIMS3P0CW19 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
LIMS3P0CW19 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 KAT8-202ENST00000448516 1789 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 NKX2-3-202ENST00000622383 1986 ntTSL 5 BASIC21.18■□□□□ 0.98
LIMS3P0CW19 SMOX-203ENST00000339123 2074 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMS3P0CW19 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
LIMS3P0CW19 DGCR6-208ENST00000608842 1837 ntTSL 2 BASIC21.18■□□□□ 0.98
LIMS3P0CW19 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 CHST11-202ENST00000546689 756 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 MLST8-219ENST00000565250 1588 ntAPPRIS P3 TSL 3 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 AC141586.4-201ENST00000624558 1573 ntBASIC21.17■□□□□ 0.98
LIMS3P0CW19 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 IQCJ-SCHIP1-201ENST00000412423 2067 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
LIMS3P0CW19 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
LIMS3P0CW19 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.16■□□□□ 0.98
LIMS3P0CW19 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 ATPAF1-213ENST00000574428 1760 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 PLEKHF2-202ENST00000519516 1144 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L13-201ENST00000554103 1267 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 AC009097.4-201ENST00000566738 777 ntTSL 2 BASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L15-201ENST00000611059 1267 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L23-201ENST00000615195 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L24-201ENST00000617576 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 LINC01971-201ENST00000617888 1048 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L22-201ENST00000618238 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L20-201ENST00000619712 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L21-201ENST00000622058 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L10-201ENST00000622460 1267 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DUX4L25-201ENST00000624915 1269 ntBASIC21.16■□□□□ 0.98
LIMS3P0CW19 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
LIMS3P0CW19 NAGLU-201ENST00000225927 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
LIMS3P0CW19 TIMM29-201ENST00000270502 1425 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 CHST11-203ENST00000547956 936 ntTSL 2 BASIC21.15■□□□□ 0.98
LIMS3P0CW19 LSR-201ENST00000347609 1880 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 LSR-213ENST00000605618 1885 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
LIMS3P0CW19 ZNF784-202ENST00000591479 1559 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
LIMS3P0CW19 ZSCAN18-212ENST00000600404 1934 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.98
LIMS3P0CW19 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC21.14■□□□□ 0.97
LIMS3P0CW19 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC21.14■□□□□ 0.97
LIMS3P0CW19 PBX1-202ENST00000367897 1459 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
LIMS3P0CW19 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.13■□□□□ 0.97
LIMS3P0CW19 ATP8B2-201ENST00000368487 1523 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms