Protein–RNA interactions for Protein: Q9Y5P4

COL4A3BP, Collagen type IV alpha-3-binding protein, humanhuman

Predictions only

Length 624 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3BPQ9Y5P4 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 ALDH3A1-212ENST00000494157 1572 ntTSL 3 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC52A1-202ENST00000424747 2412 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC18.68■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 LIN54-204ENST00000505397 2742 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 NFATC1-208ENST00000586434 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 FAM181B-201ENST00000329203 3924 ntAPPRIS P1 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 AC010478.1-202ENST00000559112 2367 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 PCDHA13-202ENST00000409494 4884 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 PON2-201ENST00000222572 1745 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 CD99L2-202ENST00000355149 1278 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 LEPROTL1-203ENST00000518001 589 ntTSL 4 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 CFL1-202ENST00000524553 860 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 CITED2-204ENST00000618718 901 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 AC092902.6-201ENST00000641783 218 ntBASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 HARS-204ENST00000438307 1789 ntTSL 2 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 HOXA10-202ENST00000396344 1570 ntAPPRIS ALT1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 TSC22D1-AS1-201ENST00000616360 2845 ntTSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 NEURL1B-201ENST00000369800 6424 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 AC092171.3-201ENST00000610122 2651 ntBASIC18.67■□□□□ 0.58
COL4A3BPQ9Y5P4 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC22A20-204ENST00000530038 1673 ntBASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 PPP1R3E-201ENST00000452015 4773 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 C1QTNF1-202ENST00000339142 3100 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AL122058.1-202ENST00000426580 252 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 ACTG1P14-201ENST00000446382 1122 ntBASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AC087386.1-201ENST00000553658 572 ntTSL 4 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AC010618.3-201ENST00000596643 775 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AL139011.1-202ENST00000642063 584 ntBASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 RAB7A-203ENST00000482525 1589 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 GAPDH-201ENST00000229239 1875 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 LAT2-201ENST00000275635 1869 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AL603756.1-201ENST00000606511 2163 ntBASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 CXADR-201ENST00000284878 6254 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 BCAT2-209ENST00000599246 1449 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL4A3BPQ9Y5P4 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 ZFAND6-211ENST00000559157 1559 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 AC119396.1-201ENST00000576789 1558 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 UBALD1-205ENST00000590891 2641 ntBASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 MOSPD3-201ENST00000223054 1053 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 HCG4-201ENST00000418983 998 ntBASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 AC140658.5-201ENST00000438532 169 ntBASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 AC093714.2-201ENST00000489626 763 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 AC112191.1-201ENST00000523689 701 ntBASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 PUS1-205ENST00000535067 838 ntTSL 3 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
COL4A3BPQ9Y5P4 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms