Protein–RNA interactions for Protein: Q9UI33

SCN11A, Sodium channel protein type 11 subunit alpha, humanhuman

Predictions only

Length 1,791 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SCN11AQ9UI33 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SCN11AQ9UI33 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN11AQ9UI33 CYP4F24P-201ENST00000586049 1580 ntBASIC21.14■□□□□ 0.97
SCN11AQ9UI33 EIF3C-211ENST00000566866 2986 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SCN11AQ9UI33 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 PTGES3-202ENST00000414274 1547 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 TAB1-202ENST00000331454 1660 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 EEF1B2-201ENST00000236957 844 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC008278.1-201ENST00000431117 568 ntTSL 4 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC124944.1-201ENST00000448113 625 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC026471.2-201ENST00000569782 655 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC008494.3-201ENST00000606615 944 ntBASIC21.13■□□□□ 0.97
SCN11AQ9UI33 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 EGR2-203ENST00000439032 2844 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 PPP1R16A-202ENST00000435887 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 SLC6A8-204ENST00000430077 1892 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 XRCC3-201ENST00000352127 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC012414.7-201ENST00000621235 1507 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 CPSF4-201ENST00000292476 1691 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 CXCL6-201ENST00000226317 1718 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AP006294.1-201ENST00000415407 339 ntBASIC21.13■□□□□ 0.97
SCN11AQ9UI33 GNAQP1-201ENST00000444815 1067 ntBASIC21.13■□□□□ 0.97
SCN11AQ9UI33 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 TAGLN-206ENST00000530649 1227 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 LINC00921-202ENST00000573951 2468 ntTSL 2 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 AC099568.2-201ENST00000609194 695 ntBASIC21.13■□□□□ 0.97
SCN11AQ9UI33 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SCN11AQ9UI33 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 TUBB6-211ENST00000591208 1492 ntTSL 5 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 SH3YL1-206ENST00000405430 2064 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 C9orf62-201ENST00000623103 1924 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 PGF-202ENST00000405431 666 ntTSL 5 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 AZGP1P1-201ENST00000411909 902 ntBASIC21.12■□□□□ 0.97
SCN11AQ9UI33 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 TPRX2P-201ENST00000535362 881 ntBASIC21.12■□□□□ 0.97
SCN11AQ9UI33 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SCN11AQ9UI33 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 CEP83-AS1-201ENST00000623122 2482 ntBASIC21.11■□□□□ 0.97
SCN11AQ9UI33 SIRT6-202ENST00000337491 1641 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 RAD18-204ENST00000418463 563 ntTSL 4 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 AC098850.1-201ENST00000419919 790 ntBASIC21.11■□□□□ 0.97
SCN11AQ9UI33 RAD18-205ENST00000421052 582 ntTSL 3 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 AL353779.1-201ENST00000434793 351 ntBASIC21.11■□□□□ 0.97
SCN11AQ9UI33 AC244107.1-201ENST00000442033 332 ntBASIC21.11■□□□□ 0.97
SCN11AQ9UI33 NUTM2A-AS1-212ENST00000458739 733 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 IGHV3-71-201ENST00000523324 359 ntBASIC21.11■□□□□ 0.97
SCN11AQ9UI33 MRPL52-211ENST00000555536 451 ntTSL 3 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 TRAPPC6A-204ENST00000588062 695 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 AL583722.1-201ENST00000540171 1307 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 CHRNA7-207ENST00000635884 1975 ntTSL 5 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 RBM47-212ENST00000514014 2419 ntTSL 2 BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SCN11AQ9UI33 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 AC138969.3-201ENST00000546612 1459 ntBASIC21.1■□□□□ 0.97
SCN11AQ9UI33 AC138932.2-201ENST00000548268 1459 ntBASIC21.1■□□□□ 0.97
SCN11AQ9UI33 AC126755.4-201ENST00000549796 1459 ntBASIC21.1■□□□□ 0.97
SCN11AQ9UI33 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 SDHB-201ENST00000375499 1153 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC21.1■□□□□ 0.97
SCN11AQ9UI33 AC025048.3-201ENST00000590609 569 ntBASIC21.1■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 50 ms