Protein–RNA interactions for Protein: Q9P218

COL20A1, Collagen alpha-1(XX) chain, humanhuman

Predictions only

Length 1,284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL20A1Q9P218 AJ011932.1-201ENST00000621707 465 ntBASIC18.76■□□□□ 0.59
COL20A1Q9P218 MSL1-202ENST00000398532 4707 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC18.76■□□□□ 0.59
COL20A1Q9P218 JAK2-201ENST00000381652 5285 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC18.76■□□□□ 0.59
COL20A1Q9P218 LLGL2-209ENST00000578363 1393 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 GPAT3-202ENST00000395226 2631 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 NMD3-202ENST00000460469 3061 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.76■□□□□ 0.59
COL20A1Q9P218 ABCC5-203ENST00000382494 1923 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 DYDC2-202ENST00000372197 2022 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC18.76■□□□□ 0.59
COL20A1Q9P218 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 LGMN-202ENST00000393218 2115 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
COL20A1Q9P218 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 PTPRC-206ENST00000413409 1338 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 CFL1-203ENST00000525451 1878 ntAPPRIS P1 TSL 2 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 SLC35G1-202ENST00000427197 2402 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 NSFL1C-202ENST00000353088 2611 ntTSL 2 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 SEPHS1-202ENST00000378614 2387 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 CPVL-202ENST00000396276 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 GPS1-226ENST00000623691 1839 ntAPPRIS ALT1 TSL 5 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 BASP1P1-201ENST00000430708 665 ntBASIC18.75■□□□□ 0.59
COL20A1Q9P218 PSMB5-204ENST00000460922 729 ntTSL 2 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 LHX6-205ENST00000464484 666 ntTSL 2 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 AC098859.1-201ENST00000502915 1238 ntBASIC18.75■□□□□ 0.59
COL20A1Q9P218 IGHV3-42-201ENST00000520410 361 ntBASIC18.75■□□□□ 0.59
COL20A1Q9P218 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 MIR4745-201ENST00000577608 62 ntBASIC18.75■□□□□ 0.59
COL20A1Q9P218 LAMTOR5-208ENST00000614544 846 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 SPDYE12P-201ENST00000618416 771 ntBASIC18.75■□□□□ 0.59
COL20A1Q9P218 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 TRPV4-205ENST00000537083 2436 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 AC022211.2-201ENST00000585075 2527 ntBASIC18.75■□□□□ 0.59
COL20A1Q9P218 KANSL1-202ENST00000432791 5343 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 FICD-204ENST00000552695 3347 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC18.75■□□□□ 0.59
COL20A1Q9P218 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
COL20A1Q9P218 PNCK-202ENST00000370142 1525 ntTSL 5 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 TMEM138-201ENST00000278826 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 MARCO-201ENST00000327097 1838 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 RBBP7-204ENST00000404022 1904 ntTSL 5 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 UBALD1-205ENST00000590891 2641 ntBASIC18.74■□□□□ 0.59
COL20A1Q9P218 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 LBX1-AS1-201ENST00000430651 2553 ntTSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 RIOX2-201ENST00000333396 5347 ntAPPRIS ALT1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 MRPL28-202ENST00000389675 865 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 FBLN7-204ENST00000409667 1124 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 AC007405.3-202ENST00000426475 660 ntTSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 INGX-202ENST00000489074 768 ntBASIC18.74■□□□□ 0.59
COL20A1Q9P218 INS-205ENST00000512523 297 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 RNA5SP421-201ENST00000516864 134 ntBASIC18.74■□□□□ 0.59
COL20A1Q9P218 TATDN3-212ENST00000530441 492 ntTSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 AC015712.4-202ENST00000558641 1007 ntTSL 4 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 AC013565.3-201ENST00000565547 450 ntTSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 AC141424.1-203ENST00000599026 887 ntTSL 5 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 TBC1D4-201ENST00000377625 6182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 NR1D2-201ENST00000312521 5258 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 MOCS1-206ENST00000425303 1920 ntTSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 KLHDC7B-201ENST00000395676 2991 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 GABARAPL1-205ENST00000539170 1700 ntTSL 3 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ESR2-206ENST00000553796 1634 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 LPAR5-202ENST00000431922 2695 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 TLE3-205ENST00000539550 2464 ntTSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 AARSD1-202ENST00000427569 1322 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ZNF232-201ENST00000250076 2179 ntAPPRIS P3 TSL 5 BASIC18.74■□□□□ 0.59
COL20A1Q9P218 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC18.74■□□□□ 0.59
COL20A1Q9P218 ZGLP1-202ENST00000403903 2303 ntAPPRIS P2 TSL 1 (best) BASIC18.73■□□□□ 0.59
COL20A1Q9P218 LRRC14-205ENST00000529022 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 50.5 ms