Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 PCBP4-201ENST00000322099 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 SURF4-207ENST00000545297 2863 ntTSL 2 BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC16.51■□□□□ 0.23
MKS1Q9NXB0 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 KCNJ10-208ENST00000639408 1546 ntTSL 5 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 AP2A2-222ENST00000534328 1491 ntTSL 5 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 SH2B1-206ENST00000545570 1488 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 GSPT2-201ENST00000340438 2802 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 TRAPPC3-202ENST00000373162 1056 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 SLC2A8-201ENST00000373352 914 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 KRTAP5-6-201ENST00000382160 561 ntAPPRIS P1 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 RCN1P1-201ENST00000400413 996 ntBASIC16.5■□□□□ 0.23
MKS1Q9NXB0 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 AC104819.1-201ENST00000504587 486 ntBASIC16.5■□□□□ 0.23
MKS1Q9NXB0 AC022424.1-201ENST00000512155 889 ntTSL 3 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 AC012615.1-201ENST00000565797 1299 ntBASIC16.5■□□□□ 0.23
MKS1Q9NXB0 AC010776.2-201ENST00000588946 1081 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 CYP2A7P1-201ENST00000595391 815 ntBASIC16.5■□□□□ 0.23
MKS1Q9NXB0 TUBB4A-209ENST00000598006 565 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 AC064862.7-201ENST00000604520 867 ntBASIC16.5■□□□□ 0.23
MKS1Q9NXB0 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 CCDC94-201ENST00000262962 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 RIMS3-201ENST00000372683 1408 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 RASGEF1C-206ENST00000522500 2055 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 TMEM177-201ENST00000272521 1394 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 ARID5A-201ENST00000357485 2188 ntAPPRIS P1 TSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 SLC1A7-204ENST00000611397 2499 ntTSL 1 (best) BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC16.5■□□□□ 0.23
MKS1Q9NXB0 SLC22A20-204ENST00000530038 1673 ntBASIC16.5■□□□□ 0.23
MKS1Q9NXB0 MAPK8IP2-202ENST00000329492 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 SPAG16-209ENST00000447990 1330 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 GRB7-204ENST00000394211 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 ISCA1-202ENST00000326094 1264 ntTSL 3 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 MBP-202ENST00000355994 2772 ntTSL 5 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 ITM2B-201ENST00000378549 805 ntTSL 5 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 MOBP-208ENST00000441980 830 ntAPPRIS P4 TSL 4 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 LINC00963-208ENST00000454968 1403 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 AC010655.4-201ENST00000462662 707 ntTSL 4 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 BX005266.1-201ENST00000473402 457 ntBASIC16.49■□□□□ 0.23
MKS1Q9NXB0 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 MIR3180-1-201ENST00000580374 94 ntBASIC16.49■□□□□ 0.23
MKS1Q9NXB0 MIR3180-3-201ENST00000584616 94 ntBASIC16.49■□□□□ 0.23
MKS1Q9NXB0 RLN3-202ENST00000585987 541 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 IL11-204ENST00000590625 1028 ntTSL 2 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 AP001269.4-201ENST00000609611 512 ntBASIC16.49■□□□□ 0.23
MKS1Q9NXB0 SERPINB6-207ENST00000612421 1570 ntTSL 2 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 PGM5P2-202ENST00000637225 1043 ntBASIC16.49■□□□□ 0.23
MKS1Q9NXB0 HIP1R-201ENST00000253083 4539 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 RBCK1-201ENST00000353660 2511 ntTSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
MKS1Q9NXB0 GALNT14-201ENST00000324589 2169 ntTSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 NF1-211ENST00000487476 2265 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 ACY1-206ENST00000476351 1409 ntTSL 3 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 OSBPL6-203ENST00000357080 2217 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
MKS1Q9NXB0 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC16.48■□□□□ 0.23
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms