Protein–RNA interactions for Protein: Q9NQG7

HPS4, Hermansky-Pudlak syndrome 4 protein, humanhuman

Predictions only

Length 708 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4Q9NQG7 MIR3909-201ENST00000579518 119 ntBASIC17.28■□□□□ 0.36
HPS4Q9NQG7 FOS-208ENST00000555686 1496 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 HPGD-213ENST00000541923 2920 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 RTKN2-203ENST00000395260 2076 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 TPR-209ENST00000613151 2478 ntTSL 5 BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 AC016396.2-201ENST00000562575 1417 ntBASIC17.28■□□□□ 0.36
HPS4Q9NQG7 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 AC124067.4-201ENST00000519691 2379 ntBASIC17.28■□□□□ 0.36
HPS4Q9NQG7 MFSD2A-202ENST00000372811 2154 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC17.28■□□□□ 0.36
HPS4Q9NQG7 FO538757.1-201ENST00000623083 1397 ntBASIC17.28■□□□□ 0.36
HPS4Q9NQG7 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 ORAI2-205ENST00000478730 5531 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 GCGR-201ENST00000400723 2051 ntAPPRIS P2 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC004951.4-201ENST00000454572 2076 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 SUPT20H-203ENST00000360252 2843 ntAPPRIS P3 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 PENK-201ENST00000314922 1199 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 BASP1P1-201ENST00000430708 665 ntBASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC140878.1-201ENST00000565277 250 ntBASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AP000842.3-202ENST00000569238 1080 ntBASIC17.27■□□□□ 0.36
HPS4Q9NQG7 NAA60-208ENST00000570819 833 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 MPDU1-223ENST00000582151 728 ntBASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC104985.1-201ENST00000587528 507 ntTSL 3 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC027307.2-201ENST00000591252 911 ntBASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC090241.2-202ENST00000602333 633 ntTSL 3 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC008267.7-201ENST00000624570 1194 ntBASIC17.27■□□□□ 0.36
HPS4Q9NQG7 CDC42EP4-209ENST00000630622 240 ntTSL 5 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 SUZ12-204ENST00000580398 3977 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
HPS4Q9NQG7 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 KCNQ5-212ENST00000628967 3527 ntTSL 2 BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 AC053503.2-201ENST00000420563 1598 ntTSL 2 BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 TRAM1-201ENST00000262213 2785 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 NFIC-211ENST00000641145 8399 ntBASIC17.27■□□□□ 0.35
HPS4Q9NQG7 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 NRBP2-202ENST00000442628 3587 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
HPS4Q9NQG7 AC016027.1-202ENST00000607927 1699 ntBASIC17.26■□□□□ 0.35
HPS4Q9NQG7 YY1AP1-206ENST00000359205 2690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 EWSR1-206ENST00000397938 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 ZNF48-206ENST00000622647 2695 ntTSL 4 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 C8orf76-201ENST00000276704 1341 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 PRCC-201ENST00000271526 2105 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 DDX1-207ENST00000617198 2257 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 DMKN-201ENST00000339686 1927 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 FFAR2-201ENST00000246549 2051 ntAPPRIS P1 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 TMEM270-201ENST00000320531 854 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 CACNB2-206ENST00000377328 1233 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 BAD-202ENST00000394531 631 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 WNT7B-203ENST00000410058 714 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 TREML5P-201ENST00000421694 576 ntBASIC17.26■□□□□ 0.35
HPS4Q9NQG7 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 TMEM33-208ENST00000513702 1092 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 BAD-207ENST00000544785 525 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 AC004846.2-201ENST00000556578 777 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 RCAN3-211ENST00000630217 658 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 AC131009.4-201ENST00000624048 1740 ntBASIC17.26■□□□□ 0.35
HPS4Q9NQG7 CSRNP1-201ENST00000273153 3148 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 SLC39A1-211ENST00000621013 2322 ntAPPRIS P1 TSL 2 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 CEBPG-201ENST00000284000 4109 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 CBS-201ENST00000352178 2583 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
HPS4Q9NQG7 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Retrieved 100 of 98,524 protein–RNA pairs in 74.2 ms