Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 RGS11-202ENST00000316163 2376 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 BSG-215ENST00000618006 1329 ntTSL 2 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 TSPAN4-205ENST00000397406 1426 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 RSRP1-201ENST00000243189 1502 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 IQSEC1-201ENST00000273221 5279 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 TTC24-201ENST00000368236 2005 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 TCP11L2-201ENST00000299045 2219 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 CHKA-201ENST00000265689 2530 ntAPPRIS P4 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 SLC45A1-202ENST00000471889 2784 ntTSL 5 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 TMED3-203ENST00000536821 2265 ntTSL 2 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 DOLK-201ENST00000372586 2090 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 WDR53-201ENST00000332629 1679 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
RPAP1Q9BWH6 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 KRT18P32-201ENST00000424695 1287 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AL671277.1-201ENST00000429656 993 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 CNN2P2-201ENST00000443536 909 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 CNN2P3-201ENST00000450201 906 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AL512356.2-201ENST00000546955 174 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AL390955.2-201ENST00000603032 514 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 COLCA2-204ENST00000610738 975 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AL136317.3-201ENST00000618497 906 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AC244153.1-203ENST00000622796 419 ntTSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 COLCA2-206ENST00000638573 1080 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 ZBTB22-207ENST00000418724 2645 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 TCF3-212ENST00000588136 2658 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 DOLPP1-202ENST00000372546 2177 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AL603756.1-201ENST00000606511 2163 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 SYNC-202ENST00000409190 3398 ntAPPRIS P3 TSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 MYEOV-203ENST00000535407 2306 ntAPPRIS ALT2 TSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 EED-202ENST00000327320 2033 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 SMTNL2-201ENST00000338859 1919 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 GRIN2C-202ENST00000347612 2929 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 C16orf92-201ENST00000300575 895 ntAPPRIS P2 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 CGB3-201ENST00000357383 877 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 CGB2-201ENST00000359342 627 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 HCG4-201ENST00000418983 998 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 LHX6-205ENST00000464484 666 ntTSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 SERF1A-207ENST00000512649 846 ntTSL 2 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AC051619.7-201ENST00000568314 623 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 AP001059.3-201ENST00000619053 235 ntBASIC20.21■□□□□ 0.83
RPAP1Q9BWH6 GGT6-203ENST00000573591 1730 ntTSL 4 BASIC20.2■□□□□ 0.83
RPAP1Q9BWH6 SPERT-201ENST00000310521 1613 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 BDKRB2-201ENST00000539359 1600 ntTSL 2 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 GALNT10-201ENST00000297107 5961 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 COQ7-201ENST00000321998 2657 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 EPB41L3-204ENST00000540638 3370 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 TBX4-201ENST00000240335 2470 ntAPPRIS P3 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 MFF-201ENST00000304593 2004 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 RAB35-201ENST00000229340 2945 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 DDX19B-204ENST00000451014 1608 ntTSL 2 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 TFAMP1-201ENST00000412727 736 ntBASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 GPS2P2-201ENST00000430745 888 ntBASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 AC069335.1-201ENST00000489972 472 ntBASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 AC106897.1-201ENST00000512874 394 ntTSL 2 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 AC109635.5-201ENST00000533593 962 ntBASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 AC243562.1-201ENST00000560672 389 ntBASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 GREM1-201ENST00000560677 623 ntTSL 4 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC20.2■□□□□ 0.82
RPAP1Q9BWH6 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 PALM-201ENST00000264560 2755 ntAPPRIS ALT2 TSL 4 BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 ENOSF1-202ENST00000340116 1658 ntTSL 5 BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 SSH1-201ENST00000326470 2432 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 BCRP2-201ENST00000398241 1842 ntTSL 2 BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 PCDHA2-203ENST00000526136 5254 ntAPPRIS P2 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
RPAP1Q9BWH6 STEAP3-204ENST00000409811 2103 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 25.9 ms