Protein–RNA interactions for Protein: Q96NR3

PTCHD1, Patched domain-containing protein 1, humanhuman

Predictions only

Length 888 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD1Q96NR3 CD1D-201ENST00000368171 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 CRTC3-201ENST00000268184 2537 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 DUSP8-201ENST00000331588 4455 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PICALM-219ENST00000532317 3474 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 SCOC-211ENST00000614192 1959 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 YPEL3-203ENST00000562641 1941 ntTSL 3 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 OVCH1-AS1-204ENST00000641955 5529 ntBASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PTHLH-202ENST00000395868 1674 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 SCRIB-202ENST00000356994 5218 ntAPPRIS P4 TSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PDPK2P-201ENST00000382326 2387 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 LINC00336-201ENST00000477984 2107 ntTSL 2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 AC006277.1-201ENST00000624348 1610 ntBASIC15.76■□□□□ 0.11
PTCHD1Q96NR3 PRAG1-202ENST00000622241 4639 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 PIEZO1-201ENST00000301015 8072 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 ACP5-203ENST00000433365 1397 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 ACTRT3-201ENST00000330368 2005 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 DKFZP434K028-202ENST00000536405 2466 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 CACNA1A-258ENST00000638029 7814 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 SPRYD7-202ENST00000378195 3086 ntTSL 2 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 EYA2-201ENST00000317304 1540 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 SDCBP-201ENST00000260130 2167 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 MUTYH-201ENST00000354383 1744 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 PPP1R3G-201ENST00000405617 4907 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 C19orf70-201ENST00000309324 896 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 HTR5BP-201ENST00000430851 1154 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AC140658.5-201ENST00000438532 169 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 STARD13-205ENST00000439831 945 ntTSL 2 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 ALG1L5P-201ENST00000482043 771 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 MTRF1LP2-201ENST00000506027 1122 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AC112191.1-201ENST00000523689 701 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AP002472.1-201ENST00000577490 586 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 TMIGD2-203ENST00000600114 489 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AC091812.2-201ENST00000619081 385 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 ASAH1-231ENST00000636577 2129 ntTSL 5 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 TJP1-201ENST00000346128 7950 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 AL391256.1-201ENST00000443260 1855 ntBASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 C1orf56-201ENST00000368926 2096 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 KCNMA1-201ENST00000286627 6194 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 SLC41A3-203ENST00000360370 2169 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
PTCHD1Q96NR3 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 MAP4K3-202ENST00000341681 4271 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 AGGF1P2-201ENST00000426656 2106 ntBASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 GYG1-201ENST00000296048 1890 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 TCP1-203ENST00000420894 1671 ntTSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 ZBTB45-201ENST00000354590 2352 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 AC002056.1-201ENST00000395613 760 ntBASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 COA5-202ENST00000409997 557 ntTSL 4 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 BAALC-AS2-201ENST00000436771 496 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 MKNK2P1-201ENST00000437526 628 ntBASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 PTHLH-207ENST00000539239 890 ntAPPRIS ALT1 TSL 5 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 THTPA-204ENST00000554970 569 ntTSL 4 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 THTPA-206ENST00000556015 535 ntTSL 3 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 CD7-202ENST00000578509 925 ntTSL 3 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 TWSG1-202ENST00000581641 1119 ntTSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 AC013467.2-201ENST00000605472 835 ntBASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 SLC35E2B-204ENST00000614300 2156 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 SEPT6-209ENST00000489216 1617 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 ABTB1-201ENST00000232744 1965 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 SLFNL1-205ENST00000439569 2117 ntAPPRIS P3 TSL 2 BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
PTCHD1Q96NR3 THTPA-203ENST00000554789 1595 ntTSL 2 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.8 ms