Protein–RNA interactions for Protein: Q96K76

USP47, Ubiquitin carboxyl-terminal hydrolase 47, humanhuman

Predictions only

Length 1,375 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP47Q96K76 RNF187-201ENST00000305943 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP47Q96K76 NSL1-203ENST00000366978 1344 ntTSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 TSPAN4-208ENST00000409531 1339 ntTSL 5 BASIC23.26■■□□□ 1.31
USP47Q96K76 SLC5A10-204ENST00000395647 2140 ntTSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 IGFBP3-203ENST00000381086 2322 ntTSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 TAX1BP1-201ENST00000265393 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP47Q96K76 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 CBR1-202ENST00000399191 838 ntTSL 3 BASIC23.26■■□□□ 1.31
USP47Q96K76 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 AL162431.1-201ENST00000434447 543 ntTSL 3 BASIC23.26■■□□□ 1.31
USP47Q96K76 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC23.26■■□□□ 1.31
USP47Q96K76 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC23.26■■□□□ 1.31
USP47Q96K76 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC23.26■■□□□ 1.31
USP47Q96K76 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC23.26■■□□□ 1.31
USP47Q96K76 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC23.26■■□□□ 1.31
USP47Q96K76 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC23.26■■□□□ 1.31
USP47Q96K76 AC084121.4-201ENST00000641598 221 ntBASIC23.26■■□□□ 1.31
USP47Q96K76 AF228730.8-201ENST00000642140 221 ntBASIC23.26■■□□□ 1.31
USP47Q96K76 SLC9A6-208ENST00000636206 4711 ntTSL 1 (best) BASIC23.26■■□□□ 1.31
USP47Q96K76 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC23.25■■□□□ 1.31
USP47Q96K76 MAN1C1-201ENST00000263979 2627 ntTSL 5 BASIC23.25■■□□□ 1.31
USP47Q96K76 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC23.25■■□□□ 1.31
USP47Q96K76 WAC-205ENST00000375664 5924 ntTSL 1 (best) BASIC23.25■■□□□ 1.31
USP47Q96K76 CLCN2-205ENST00000457512 2820 ntAPPRIS ALT2 TSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 UCKL1-203ENST00000369908 1954 ntAPPRIS P1 TSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 PSMC3-201ENST00000298852 1544 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP47Q96K76 SLC10A3-204ENST00000393587 1862 ntAPPRIS P3 TSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 MIER1-205ENST00000371014 1728 ntTSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 RHCE-201ENST00000294413 1591 ntAPPRIS P2 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP47Q96K76 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC23.25■■□□□ 1.31
USP47Q96K76 AC093724.1-201ENST00000448659 1027 ntBASIC23.25■■□□□ 1.31
USP47Q96K76 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC23.25■■□□□ 1.31
USP47Q96K76 QPRT-203ENST00000562473 579 ntTSL 3 BASIC23.25■■□□□ 1.31
USP47Q96K76 AP000842.3-202ENST00000569238 1080 ntBASIC23.25■■□□□ 1.31
USP47Q96K76 AC027307.2-201ENST00000591252 911 ntBASIC23.25■■□□□ 1.31
USP47Q96K76 AC009093.7-201ENST00000623853 1223 ntBASIC23.25■■□□□ 1.31
USP47Q96K76 AL356481.3-201ENST00000630523 575 ntTSL 5 BASIC23.25■■□□□ 1.31
USP47Q96K76 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC23.25■■□□□ 1.31
USP47Q96K76 LMF1-201ENST00000262301 2621 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
USP47Q96K76 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 MAP4K1-201ENST00000396857 2653 ntAPPRIS P1 TSL 5 BASIC23.24■■□□□ 1.31
USP47Q96K76 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 YAP1-211ENST00000629586 1365 ntTSL 5 BASIC23.24■■□□□ 1.31
USP47Q96K76 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 PLTP-204ENST00000420868 1420 ntTSL 2 BASIC23.24■■□□□ 1.31
USP47Q96K76 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC23.24■■□□□ 1.31
USP47Q96K76 TMEM179B-201ENST00000333449 1023 ntAPPRIS P1 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 AL592309.1-201ENST00000443127 649 ntBASIC23.24■■□□□ 1.31
USP47Q96K76 AL022341.1-201ENST00000455294 389 ntTSL 2 BASIC23.24■■□□□ 1.31
USP47Q96K76 AC023141.5-201ENST00000458585 616 ntBASIC23.24■■□□□ 1.31
USP47Q96K76 C8orf46-205ENST00000480005 865 ntTSL 2 BASIC23.24■■□□□ 1.31
USP47Q96K76 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC23.24■■□□□ 1.31
USP47Q96K76 SSH2-211ENST00000590153 570 ntTSL 4 BASIC23.24■■□□□ 1.31
USP47Q96K76 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC23.24■■□□□ 1.31
USP47Q96K76 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 TBRG4-203ENST00000395655 2225 ntTSL 2 BASIC23.24■■□□□ 1.31
USP47Q96K76 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC23.24■■□□□ 1.31
USP47Q96K76 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC23.24■■□□□ 1.31
USP47Q96K76 TPBG-203ENST00000543496 2881 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 AC105760.2-201ENST00000418430 2341 ntTSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 HNF1A-212ENST00000544413 2014 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 AC100830.1-201ENST00000560387 1609 ntTSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 KRT12-201ENST00000251643 1867 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 PDE4DIP-230ENST00000530472 1690 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC23.23■■□□□ 1.31
USP47Q96K76 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC23.23■■□□□ 1.31
USP47Q96K76 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 PTMS-202ENST00000389462 773 ntTSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 FAM58DP-201ENST00000428076 619 ntBASIC23.23■■□□□ 1.31
USP47Q96K76 GPS2P2-201ENST00000430745 888 ntBASIC23.23■■□□□ 1.31
USP47Q96K76 ITPA-203ENST00000455664 729 ntTSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 SLC50A1-209ENST00000484157 886 ntTSL 3 BASIC23.23■■□□□ 1.31
USP47Q96K76 AC105233.2-201ENST00000523697 349 ntBASIC23.23■■□□□ 1.31
USP47Q96K76 AF228730.5-201ENST00000530288 346 ntBASIC23.23■■□□□ 1.31
USP47Q96K76 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC23.23■■□□□ 1.31
USP47Q96K76 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 AC004835.2-201ENST00000603762 682 ntBASIC23.23■■□□□ 1.31
USP47Q96K76 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC23.23■■□□□ 1.31
USP47Q96K76 CORO1A-208ENST00000565497 1348 ntTSL 5 BASIC23.23■■□□□ 1.31
USP47Q96K76 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC23.23■■□□□ 1.31
USP47Q96K76 CHAT-201ENST00000337653 2458 ntAPPRIS P4 TSL 1 (best) BASIC23.23■■□□□ 1.31
USP47Q96K76 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
USP47Q96K76 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC23.23■■□□□ 1.31
Retrieved 100 of 98,524 protein–RNA pairs in 42.7 ms