Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AGPAT2-201ENST00000371694 1391 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 AC016734.2-201ENST00000624325 1377 ntBASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 ARHGEF6-202ENST00000370620 4764 ntTSL 2 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 PTGES3-201ENST00000262033 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 COQ8B-201ENST00000243583 2041 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 LRIT1-201ENST00000372105 2228 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 LRRC57-204ENST00000563454 2407 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 AP002360.1-202ENST00000530460 2462 ntAPPRIS ALT2 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 HYAL2-208ENST00000447092 4054 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
ZNF540Q8NDQ6 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 DDX1-201ENST00000233084 2739 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 CORO6-202ENST00000388767 2397 ntAPPRIS P2 TSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 AC126177.1-201ENST00000547829 2218 ntBASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ANGPTL4-202ENST00000393962 1705 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 CKMT2-202ENST00000424301 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 FRMD8P1-201ENST00000440433 1524 ntBASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 LAT-204ENST00000395461 1448 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ANAPC11-211ENST00000575195 1361 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 PGLS-201ENST00000252603 1028 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 MRPL20-201ENST00000344843 721 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 SPATA22-202ENST00000355380 1216 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 HIST1H2AI-201ENST00000358739 503 ntAPPRIS P1 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 IGHV3-52-201ENST00000519770 353 ntBASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 GLI4-207ENST00000521682 1082 ntTSL 3 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 SDHD-206ENST00000528182 754 ntTSL 3 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 LINC01711-201ENST00000598340 967 ntBASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 AC004263.2-201ENST00000617183 678 ntBASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 AC008567.3-202ENST00000619671 859 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 LRRC23-215ENST00000622489 1061 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 CALM2-209ENST00000628793 1103 ntTSL 5 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ITPK1-201ENST00000267615 6066 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ELMSAN1-202ENST00000394071 7721 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 AL136379.1-201ENST00000623471 2642 ntBASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 ADAM15-208ENST00000447332 2146 ntAPPRIS ALT2 TSL 2 BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC15.55■□□□□ 0.08
ZNF540Q8NDQ6 MAGEA6-201ENST00000329342 1740 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 IFIH1-202ENST00000421365 1617 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 TPD52L2-205ENST00000352482 2339 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 TPD52L2-210ENST00000615907 2310 ntTSL 4 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 ATP6V0C-201ENST00000330398 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 KCNK7-202ENST00000342202 1283 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AC026396.1-201ENST00000419388 421 ntBASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 NUS1P1-201ENST00000446295 882 ntBASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 ADA-207ENST00000537820 1128 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AC111152.3-201ENST00000569699 673 ntBASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AC090616.6-201ENST00000582640 721 ntBASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 AC079602.3-201ENST00000623931 403 ntBASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 MPP1-202ENST00000369534 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 ME2P1-201ENST00000426028 1970 ntBASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 GATA4-201ENST00000335135 3414 ntAPPRIS P3 TSL 5 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 TBXAS1-202ENST00000411653 1792 ntTSL 1 (best) BASIC15.54■□□□□ 0.08
ZNF540Q8NDQ6 ZNF746-201ENST00000340622 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.54■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms