Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AL365203.3-201ENST00000609742 2057 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 TCF25-201ENST00000263346 2233 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 TRIM46-203ENST00000368383 2666 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 UPP1-203ENST00000395564 1375 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 PANX2-201ENST00000159647 2964 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 FRMD8P1-201ENST00000440433 1524 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 SSBP3-205ENST00000417664 1666 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 TRMT44-205ENST00000513449 1666 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 TTLL5-219ENST00000556977 1961 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 GNS-201ENST00000258145 5122 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 ASIC3-201ENST00000297512 1718 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 SSSCA1-201ENST00000309328 698 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 CHCHD1-201ENST00000372833 835 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 MAP7D1-203ENST00000373150 3238 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AL391256.1-201ENST00000443260 1855 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC068472.1-201ENST00000474589 881 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC064807.1-201ENST00000518942 816 ntTSL 3 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AL035078.1-201ENST00000531962 820 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AP001453.1-201ENST00000534988 923 ntTSL 3 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 RAD52-211ENST00000536177 1139 ntAPPRIS ALT2 TSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 CCDC61-201ENST00000536603 1282 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 ZNF688-207ENST00000567855 540 ntTSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC016590.1-204ENST00000586442 813 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC008735.1-201ENST00000592252 802 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC019129.2-201ENST00000609837 1235 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 IRF5-214ENST00000613821 595 ntTSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 MTHFR-217ENST00000641820 1569 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 SHISA9-203ENST00000558583 6724 ntAPPRIS P4 TSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC092364.2-201ENST00000596710 2692 ntBASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 AC005920.1-201ENST00000501718 2054 ntTSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 WWTR1-204ENST00000467467 1603 ntAPPRIS P1 TSL 5 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 ARHGAP27-208ENST00000528384 2296 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC15.64■□□□□ 0.09
DEPDC4Q8N2C3 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 LINC02228-204ENST00000642115 2962 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 THAP3-201ENST00000054650 1366 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 RBM47-202ENST00000381793 4816 ntAPPRIS ALT1 TSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AC010460.3-201ENST00000511359 1579 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AC006538.1-201ENST00000567905 1585 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 RAB5A-203ENST00000422242 1443 ntTSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 TCP10-201ENST00000366827 2250 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 MPG-203ENST00000397817 1039 ntAPPRIS ALT2 TSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AC068134.1-202ENST00000439072 356 ntTSL 5 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 FAAHP1-202ENST00000446499 1238 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 SKP2-204ENST00000508514 821 ntTSL 3 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AC092131.1-201ENST00000564046 548 ntTSL 4 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 AC138894.3-201ENST00000603787 634 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 NOS1AP-205ENST00000493151 5559 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 FAM131B-206ENST00000443739 4382 ntAPPRIS ALT1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 SIGLEC7-201ENST00000305628 1469 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 GPR89P-201ENST00000407924 1495 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 NORAD-201ENST00000565493 5339 ntBASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 ULBP2-201ENST00000367351 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 C2orf27B-201ENST00000623129 1325 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 ROBO3-221ENST00000543966 1520 ntTSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 KRT84-201ENST00000257951 2092 ntAPPRIS P1 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 ATXN7-213ENST00000538065 6842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 SYNE3-203ENST00000554873 2826 ntTSL 5 BASIC15.63■□□□□ 0.09
DEPDC4Q8N2C3 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
DEPDC4Q8N2C3 ABCB6-201ENST00000265316 3016 ntAPPRIS P1 TSL 1 (best) BASIC15.62■□□□□ 0.09
DEPDC4Q8N2C3 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC15.62■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 29.5 ms