Protein–RNA interactions for Protein: Q6DD88

ATL3, Atlastin-3, humanhuman

Predictions only

Length 541 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATL3Q6DD88 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC19.07■□□□□ 0.64
ATL3Q6DD88 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
ATL3Q6DD88 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ATL3Q6DD88 RASIP1-201ENST00000222145 3308 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
ATL3Q6DD88 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC19.07■□□□□ 0.64
ATL3Q6DD88 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 HAPLN3-201ENST00000359595 1980 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 PGRMC2-207ENST00000520121 3785 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 SMIM10-201ENST00000330288 1536 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 MAGI1-213ENST00000483466 4791 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 GMPR2-217ENST00000559104 1719 ntTSL 5 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 AC024909.3-201ENST00000611513 2257 ntBASIC19.06■□□□□ 0.64
ATL3Q6DD88 C12orf65-201ENST00000253233 2073 ntAPPRIS P2 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 MRNIP-201ENST00000292586 1238 ntAPPRIS P4 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 AC073621.1-201ENST00000392730 636 ntBASIC19.06■□□□□ 0.64
ATL3Q6DD88 MRPL52-208ENST00000553711 586 ntTSL 3 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 AC008667.4-201ENST00000607370 168 ntBASIC19.06■□□□□ 0.64
ATL3Q6DD88 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 GUCD1-203ENST00000404664 1606 ntTSL 2 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 CICP6-201ENST00000457191 2729 ntBASIC19.06■□□□□ 0.64
ATL3Q6DD88 AL512625.1-201ENST00000305709 2541 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 AC105917.1-201ENST00000506637 2539 ntBASIC19.06■□□□□ 0.64
ATL3Q6DD88 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC19.06■□□□□ 0.64
ATL3Q6DD88 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
ATL3Q6DD88 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 ACTR3-208ENST00000535589 1530 ntTSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 AKR1C7P-201ENST00000305623 895 ntBASIC19.05■□□□□ 0.64
ATL3Q6DD88 GRHPR-201ENST00000318158 1280 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 FAM3A-205ENST00000393572 1041 ntTSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 ODF3B-202ENST00000401779 869 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 ODF3B-203ENST00000403326 643 ntTSL 3 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 CDK2AP2P3-201ENST00000422476 372 ntBASIC19.05■□□□□ 0.64
ATL3Q6DD88 TSTD1-204ENST00000423014 593 ntAPPRIS ALT2 TSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 C1orf226-202ENST00000426197 1049 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 MPIG6B-210ENST00000480039 790 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 AC080013.1-201ENST00000495318 566 ntTSL 4 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 SKP2-204ENST00000508514 821 ntTSL 3 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 AC136632.2-201ENST00000512891 861 ntBASIC19.05■□□□□ 0.64
ATL3Q6DD88 AP001107.6-201ENST00000526655 516 ntTSL 3 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 MMP17-203ENST00000535004 719 ntTSL 3 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 COQ7-208ENST00000568985 714 ntAPPRIS P3 TSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 PRR29-207ENST00000580752 458 ntTSL 3 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 IFT140-203ENST00000426508 5270 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 KHK-202ENST00000260599 2411 ntAPPRIS ALT1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 COQ8B-202ENST00000324464 2443 ntAPPRIS P3 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 FAM83G-201ENST00000345041 2929 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 ZNF580-202ENST00000543039 1707 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 WDR45-239ENST00000634944 1745 ntAPPRIS P1 TSL 5 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC19.05■□□□□ 0.64
ATL3Q6DD88 CROCCP3-201ENST00000263511 5368 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
ATL3Q6DD88 AC008894.3-201ENST00000624324 3103 ntBASIC19.05■□□□□ 0.64
ATL3Q6DD88 KRT73-201ENST00000305748 2284 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
ATL3Q6DD88 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC19.04■□□□□ 0.64
ATL3Q6DD88 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ATL3Q6DD88 C1QC-202ENST00000374639 1183 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 MYCNOS-201ENST00000419083 770 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ATL3Q6DD88 EEF1E1-202ENST00000429723 562 ntTSL 3 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 SLC9A3P2-201ENST00000447821 2021 ntBASIC19.04■□□□□ 0.64
ATL3Q6DD88 AF238378.1-201ENST00000526806 358 ntBASIC19.04■□□□□ 0.64
ATL3Q6DD88 GSTO1-207ENST00000539281 1052 ntTSL 5 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 ANKRD35-202ENST00000544626 3093 ntTSL 5 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 CIPC-205ENST00000555437 566 ntTSL 3 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 RIN3-211ENST00000557762 517 ntTSL 3 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 PAM16-208ENST00000573553 722 ntTSL 2 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 ATPAF2-213ENST00000585101 566 ntTSL 4 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 RPS15-207ENST00000591032 550 ntTSL 3 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 RPS15-212ENST00000593052 629 ntTSL 2 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 WT1-AS_2.1-201ENST00000613208 137 ntBASIC19.04■□□□□ 0.64
ATL3Q6DD88 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC19.04■□□□□ 0.64
ATL3Q6DD88 NUTM2F-201ENST00000253262 2561 ntAPPRIS P2 TSL 1 (best) BASIC19.04■□□□□ 0.64
ATL3Q6DD88 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
ATL3Q6DD88 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 69.4 ms