Protein–RNA interactions for Protein: Q5VTB9

RNF220, E3 ubiquitin-protein ligase RNF220, humanhuman

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF220Q5VTB9 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 PTCH1-201ENST00000331920 8057 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 KLK14-202ENST00000391802 1133 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AL035541.1-201ENST00000424850 823 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AL845331.1-201ENST00000424978 1190 ntBASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC246785.2-201ENST00000432512 513 ntBASIC16.17■□□□□ 0.18
RNF220Q5VTB9 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC140504.1-202ENST00000568222 652 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 ARL16-209ENST00000573715 763 ntTSL 3 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 ARL16-211ENST00000576135 694 ntTSL 3 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 ZNF524-203ENST00000591046 1260 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC124864.1-201ENST00000623408 392 ntBASIC16.17■□□□□ 0.18
RNF220Q5VTB9 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC026748.1-201ENST00000624349 3251 ntBASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC009779.2-201ENST00000552576 1443 ntTSL 4 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 LRRC61-201ENST00000323078 1684 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 TBRG4-202ENST00000361278 1917 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 C9orf64-203ENST00000376344 2443 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AMT-250ENST00000637682 1823 ntTSL 5 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AMACR-205ENST00000426255 1316 ntTSL 2 BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 SPCS2-201ENST00000263672 2708 ntAPPRIS P2 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 TAOK3-201ENST00000392533 4384 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 ZNF197-203ENST00000383744 1989 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
RNF220Q5VTB9 AC139749.1-202ENST00000617529 3139 ntBASIC16.17■□□□□ 0.18
RNF220Q5VTB9 ISYNA1-202ENST00000457269 1703 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 CYB561-203ENST00000392976 3151 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 LRRFIP1-201ENST00000244815 4370 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 EP400-203ENST00000333577 3092 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 DTNBP1-203ENST00000355917 1359 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 CYP46A1-201ENST00000261835 2181 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 SPOCK1-202ENST00000394945 4846 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 PURB-201ENST00000395699 9069 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 MYOG-201ENST00000241651 1528 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 SLC22A1-201ENST00000324965 1521 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 MANSC1-202ENST00000535902 5831 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 PFN1-201ENST00000225655 1291 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 ANKRD37-201ENST00000335174 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AURKAIP1-202ENST00000338338 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 ZNF32-201ENST00000374433 1137 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AC122714.2-201ENST00000502787 707 ntBASIC16.16■□□□□ 0.18
RNF220Q5VTB9 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 CD320-202ENST00000537716 1119 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 TSFM-208ENST00000543727 651 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AC011840.4-201ENST00000578471 627 ntBASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AC005336.2-201ENST00000593183 939 ntBASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AC019129.2-201ENST00000609837 1235 ntBASIC16.16■□□□□ 0.18
RNF220Q5VTB9 IGHV3-41-201ENST00000613121 348 ntBASIC16.16■□□□□ 0.18
RNF220Q5VTB9 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 ARHGEF4-205ENST00000409359 5489 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 SLC35A3-221ENST00000640600 3341 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 IL18BP-214ENST00000620017 1566 ntTSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 JAK3-201ENST00000458235 5432 ntAPPRIS P2 TSL 5 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 TFAP2C-201ENST00000201031 2866 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 KDM8-202ENST00000441782 1612 ntTSL 2 BASIC16.16■□□□□ 0.18
RNF220Q5VTB9 GPR153-201ENST00000377893 4082 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 EPB41L3-206ENST00000544123 3972 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 BIN3-201ENST00000276416 1835 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 DGKI-201ENST00000288490 3895 ntAPPRIS P3 TSL 5 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 SYBU-224ENST00000529690 1983 ntAPPRIS ALT2 TSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 TARSL2-201ENST00000335968 3610 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 TINF2-201ENST00000267415 1852 ntAPPRIS P4 TSL 1 (best) BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 ASB10-202ENST00000377867 1738 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 ENDOV-205ENST00000518644 625 ntTSL 4 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 NME3-204ENST00000563498 920 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 GFOD1-206ENST00000612338 2481 ntTSL 2 BASIC16.15■□□□□ 0.18
RNF220Q5VTB9 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.5 ms