Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 RN7SL555P-201ENST00000584742 339 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 FAAP24-204ENST00000590179 784 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 LCN9-204ENST00000619315 528 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 CORO6-210ENST00000580212 2345 ntTSL 5 BASIC10.14□□□□□ -0.79
HSPG2P98160 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 HMBS-203ENST00000442944 1548 ntTSL 5 BASIC10.14□□□□□ -0.79
HSPG2P98160 RUVBL1-202ENST00000464873 2126 ntTSL 2 BASIC10.14□□□□□ -0.79
HSPG2P98160 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 OGG1-206ENST00000349503 1950 ntTSL 5 BASIC10.14□□□□□ -0.79
HSPG2P98160 RASSF6-202ENST00000335049 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 PSME1-201ENST00000206451 1006 ntAPPRIS P1 TSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 FGFR3P5-201ENST00000564496 886 ntBASIC10.14□□□□□ -0.79
HSPG2P98160 KCNH1-210ENST00000640044 1818 ntTSL 1 (best) BASIC10.14□□□□□ -0.79
HSPG2P98160 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 CORO1C-204ENST00000541050 2487 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 SNRPN-202ENST00000390687 1528 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 ASB7-202ENST00000343276 1694 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 WDR3-202ENST00000369441 1035 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 AP000350.4-201ENST00000433835 788 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
HSPG2P98160 SPTLC1P5-201ENST00000450718 252 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 Z93015.1-201ENST00000451718 390 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 AC124301.1-201ENST00000524885 602 ntTSL 3 BASIC10.13□□□□□ -0.79
HSPG2P98160 AC136475.2-201ENST00000526612 392 ntTSL 3 BASIC10.13□□□□□ -0.79
HSPG2P98160 PTP4A1P2-201ENST00000546033 454 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 AC025154.2-203ENST00000550214 1031 ntTSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC10.13□□□□□ -0.79
HSPG2P98160 AC021097.1-201ENST00000607902 574 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
HSPG2P98160 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 LYPLAL1-201ENST00000366927 1819 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 TRIM7-204ENST00000393319 2320 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 YBX1P6-201ENST00000442962 1002 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 NME4-207ENST00000450036 985 ntTSL 3 BASIC10.13□□□□□ -0.79
HSPG2P98160 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 PRKXP1-201ENST00000561423 1122 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 LINC01115-203ENST00000606068 577 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 PRKN-211ENST00000615065 261 ntTSL 5 BASIC10.13□□□□□ -0.79
HSPG2P98160 C9orf50-202ENST00000619117 796 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 FAM91A1-207ENST00000521166 2706 ntTSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 GAL3ST1-203ENST00000402321 1908 ntAPPRIS P1 TSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 TAPBP-238ENST00000475304 1686 ntAPPRIS ALT2 TSL 5 BASIC10.13□□□□□ -0.79
HSPG2P98160 SCP2-201ENST00000371509 1889 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 TSPO-201ENST00000329563 955 ntAPPRIS P1 TSL 3 BASIC10.13□□□□□ -0.79
HSPG2P98160 AC073316.1-202ENST00000402115 988 ntTSL 5 BASIC10.13□□□□□ -0.79
HSPG2P98160 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC10.13□□□□□ -0.79
HSPG2P98160 ENPP7P5-201ENST00000541031 1031 ntBASIC10.13□□□□□ -0.79
HSPG2P98160 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 DUSP18-206ENST00000407308 1978 ntAPPRIS P1 TSL 5 BASIC10.13□□□□□ -0.79
HSPG2P98160 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC10.13□□□□□ -0.79
HSPG2P98160 ICAM3-205ENST00000589261 2024 ntTSL 1 (best) BASIC10.13□□□□□ -0.79
HSPG2P98160 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 AL161719.1-201ENST00000442716 385 ntTSL 5 BASIC10.12□□□□□ -0.79
HSPG2P98160 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC10.12□□□□□ -0.79
HSPG2P98160 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC10.12□□□□□ -0.79
HSPG2P98160 NKD2-202ENST00000296849 2155 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 ULK3-220ENST00000569437 2611 ntAPPRIS ALT1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 RAB17-201ENST00000264601 1966 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 PCCB-201ENST00000251654 1833 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 KLHDC3-203ENST00000332245 1494 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 SLC16A13-201ENST00000308027 1748 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC10.12□□□□□ -0.79
HSPG2P98160 BEX2-201ENST00000372674 668 ntAPPRIS P1 TSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 HNRNPA1P32-201ENST00000396326 963 ntBASIC10.12□□□□□ -0.79
HSPG2P98160 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC10.12□□□□□ -0.79
HSPG2P98160 AL157902.1-202ENST00000425010 763 ntTSL 3 BASIC10.12□□□□□ -0.79
HSPG2P98160 AC016700.1-201ENST00000429424 312 ntBASIC10.12□□□□□ -0.79
HSPG2P98160 RPL13AP19-201ENST00000434320 584 ntBASIC10.12□□□□□ -0.79
HSPG2P98160 KRT18P66-201ENST00000452970 1269 ntBASIC10.12□□□□□ -0.79
HSPG2P98160 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC10.12□□□□□ -0.79
HSPG2P98160 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC10.12□□□□□ -0.79
HSPG2P98160 AC133539.2-201ENST00000604757 467 ntBASIC10.12□□□□□ -0.79
HSPG2P98160 FHL2-212ENST00000607522 759 ntTSL 2 BASIC10.12□□□□□ -0.79
HSPG2P98160 KISS1-202ENST00000625357 435 ntAPPRIS ALT2 TSL 5 BASIC10.12□□□□□ -0.79
HSPG2P98160 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
HSPG2P98160 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC10.12□□□□□ -0.79
HSPG2P98160 TMEM175-201ENST00000264771 1860 ntAPPRIS P1 TSL 1 (best) BASIC10.12□□□□□ -0.79
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms